>Campylobacter   jejuni 3
AU--GUC----CGUGAUUAUAC-AGAUG-UGGAAACGCCUUGCUCCAUCCCGAACC-AAG
AAGCUAAGCACAUCGUGGG--U-GAU-G-AUACUACGCC---UUACUGGCAGGGGGAAA-
G-UA-GCUCAUUGCG----GACUU
>Methanothermobacter
GU--UG------GCGGUCAUGG-CGUGG-GGUUUAUACCUGAUCUCGUUUCGAUCU-CAG
UAGUUAAGUCCUGCUGCGUUGUGGGUGU-GUACUGCGGUUUU--UUG-CU-GUGGGAAGC
C-CA-CUUCACUGCC---AGACAA
>Candida   albicans 1
GG--U------UGCGGCCAUAU-CUAGC-AGAAAGCACCGUUCCCCGU-UCGAUCAACCG
UAGUUAAGCUGCUAAGAGCAAUACCG-A-GUAGUGUAGUGGGAGACC-AU-ACGCGAAA-
C-UA-UUGUGCUGCA---A--UCU
>Sulfolobus
GC--CCA----CCCGGUCACAG-UGAGC-GGGCAACACCCGGACUCAUUUCGAACC-CGG
AAGUUAAGCCG-CUCACGU--UAGUG-GGGCCGUGGAUACCGUGAGG-AU-CCGCAGCC-
C-CA-CUAAGCUGGGAUGGGUUUU
>Dictyostelium   discoideum 1
GU--A------UACGGCCAUAC-UAGGU-UGGAAACACAUCAUCCCGU-UCGAUCU-GAU
AAGUAAAUCGACCUCAGGCC-UUCCA-A-GUACUCUGGUUGGAGACA-AC-AGGGGAAC-
A-UA-GGGUGCUGUA---U--ACU
>Nosema   bombycis 1
GA---------UACGGUUAUAU-UUACU-GAAAACCACCGGAACCCAU-CAGAACU-CCG
AAGUUAAACCAGUAUGAGCU-UAAUU-A-GUACUAAGAAGGGAGACC-AC-UUGGGAAC-
G-UU-GGGU---------G--GUA
>Zea   mays 1
GG--A------UGCGAUCAUAC-CAGCA-CUAAAGCACCGGAUCCCAU-CAGAACU-CCG
AAGUUAAGCGUGCUUGGGCG-AGAGU-A-GUACUAGGAUGGGUGACC-UC-CUGGGAAG-
U-CC-UCGUGUUGCA---U--UCC
>Cryptosporidium   parvum 1
GC--A------AUCGGCCAUAC-UACAU-CGAAUAUACCGGAUCCCAU-CAGAACU-CCG
AAGUCAAGCGGUGUAAGGUU-CGGUU-A-GUACUAGGGUGGGGGACC-AC-CUGGGAAG-
ACCA-GAAUGUCGAU---CGCCUC
>Euglena
GA--G------UACGGCCAUAC-UACCG-GGAAUACACCUGAACCCGU-UCGAUUU-CAG
AAGUUAAGCCGGGUUAGGCC-CAGUU-A-GUACUGAG-UGGGCGACC-AC-UUGGGAAC-
A-CU-GGGUGCUGUA---C-GCUU
>Caenorhabditis   elegans 1
GC--U------UACGACCAUAU-CACGU-UGAAUGCACGCCAUCCCGU-CCGAUCU-GGC
AAGUUAAGCAACGUUGAGUC-CAGUU-A-GUACUUGGAUCGGAGACG-GC-CUGGGAAU-
C-CU-GGAUGUUGUA---A--GCU
>Drosophila   melanogaster 1
GC--C------AACGACCAUAC-CACGC-UGAAUACAUCGGUUCUCGU-CCGAUCA-CCG
AAAUUAAGCAGCGUCGGGCG-CGGUU-A-GUACUUAGAUGGGGGACC-GC-UUGGGAAC-
A-CC-GCGUGUUGUU---G-GCCU
>Homo
GU--C------UACGGCCAUAC-CACCC-UGAACGCGCCCGAUCUCGU-CUGAUCU-CGG
AAGCUAAGCAGGGUCGGGCC-UGGUU-A-GUACUUGGAUGGGAGACC-GC-CUGGGAAU-
A-CC-GGGUGCUGUA---GGCUUU
>Methanospirillum   hungatei 1
UC--A-A-U--AGCGGCCACAG-CAGGU-GUGUCACACCCGUUCCCAUUCCGAACA-CGG
AAGUUAAGACACCUCACGUGGAUGAC-G-GUACUGAGGUACGCGAGU-CC-UCGGGAAA-
U-CAUCCUCGCUGCU---AUUGUU
>Flavobacterium   hydatis 1
UA--A------GGUGGUUAUUG-CGGCG-GGGCUCGACCUCUUCCCAUCCCGAACA-GAG
UAGUUAAGCCCGCCUGCGC--A-GAU-G-GUACUGCAGU-------U-AU-GUGGGAGA-
G-UA-UGUCGUCGCC-----UUUC
>Bacillus   anthracis 1
UU--U------GGUGAUGAUGG-CAGAG-AGGUCACACCCGUUCCCAUACCGAACA-CGG
AAGUUAAGCUCUCUAGCGC--C-GAU-G-GUAGUUGGGAC--CUUGU-CC-CUGUGAGA-
G-UA-GGACGUCGCC---A--AGC
>Thermotoga   maritima 1
AU--CCC-CG-GGUGCCGAUAC-UGGGGCGGGAAACACCCGGUUCCAUUCCGAACC-CGG
CCGUUAAGCCGCCCUGGGC--C-GAU-G-GUAGUAUGGGG-GCAGCC-CC-AUGCGAGA-
G-UA-GGUAGCGCCC---GGGGAU
>Escherichia
UGCCU------GGCGGCCGUAG-CGCGG-UGGUCCCACCUGACCCCAUGCCGAACU-CAG
AAGUGAAACGCCGUAGCGC--C-GAU-G-GUAGUGUGGGG--UCUCC-CC-AUGCGAGA-
G-UA-GGGAACUGCC---AGGCAU
>Agrobacterium   tumefaciens 6
CG--ACC-U--GGUGGUCAUCG-CGGGG-CGGCUGCACCCGUUCCCUUUCCGAACA-CGG
CCGUGAAACGCCCCAGCGC--C-AAU-G-GUACUUCGUCU--CAA-G-AC-GCGGGAGA-
G-UA-GGUCGCUGCC---AGGUCU
>Thermus
AA--UCCCC--CGUGCCCAUAG-CGGCG-UGGAACCACCCGUUCCCAUUCCGAACA-CGG
AAGUGAAACGCGCCAGCGC--C-GAU-G-GUACUGGGCGG-GCGACC-GC-CUGGGAGA-
G-UA-GGUCGGUGCG---GGGGAU
>Thermoplasma
GG--CA------ACGGUCAUAG-CAGCA-GGGAAACACCAGAUCCCAUUCCGAACU-CGA
CGGUUAAGCCU-GCUGCGUAUUGCGU-U-GUACUGUAUGCCGCGAGG-GU-ACGGGAAGC
G-CA-AUAUGCUGUU---ACCACU
>Halorubrum   distributum 1
GU--A------GGCGGCCAAAG-CGGCA-GGGAAAGACCCGUACCCAUUCCGAACA-CGG
AAGUGAAGCCUGCCAGCGUACCAGCU-A-GUACUGGAGUGGGAGACC-CU-CUGGGAGC-
G-CUGGUUCGCCGCC----UACUC
>Pyrobaculum   aerophilum 1
GC--CCC-UAACCCGGCCAUAGGCGCCG-GUGAUACGCCCGGUCUCAU-CAGAACC-CGG
AAGCUAAGGCCGGCGCCGCGCUCGGG-A-GUACUGGGCUCCGCGAGG-GC-CCGGGAAA-
C-CG-GCGUGCUGGGAGGGGGCUU
>Methanococcus
UG--ACA-U--AACGGUCAAAG-CGGAG-GUGUAACAUCCGAUCCCAUCCCGAUCU-CGG
AAAUUAAGCCCUCCAGCGAUUCUUUA-A-GUACUGCU-------AUC-UA-GUGGGAAC-
A-AAGUGACGCCGUU---AGUCAC
>Nanoarchaeum   equitans 1
GU--UUCGUGGGAGGGCCAUAG-CGGCCCGGGAACCACCCGUACCCAUCUCGAACA-CGG
AAGUUAAGCCGGGCCGCGUCCCGAGU-G-GUACUGCCCC--GCGAAG-GG-GUGGGAAGC
U-C---------GGG---AUGCCC
>Thermococcus
GG--UA--C--GGCGGUCAUAG-CGGCG-GGGUCACACCCGGUCUCGUUUCGACCC-CGG
AAGUUAAGCCCGCCAGCGAUCCCGGU-U-GUACUGCCCUCCGGGAGG-GG-GCGGGAAC-
C-GG-GGACGCCGCC---GGCCAC
