CLUSTAL X (1.83) multiple sequence alignment


m.kuehneanum                ----------------------------------------------TAGT
m.shastense                 --------------------------------------------------
m.scabiosae                 --------------------------------------------GTAGTG
m.scorzonerae               --------------------------------------------------
m.reticulatum               --------------------------------------------------
m.stygium                   --------------------------------------------------
m.parlatorei                --------------------------------------TTCCGTAGG-TG
m.betonicae                 --------------------------------------TTCCGTAGG-TG
m.intermedium               --------------------------------------TTCCGTAGG-TG
m.onopordi                  --------------------------------------TTCCGTAGG-TG
m.bistortarum               ------------------------------------------GAAGGATG
m.nepalense                 --------------------------------------TTCCGTAGG-TG
m.pustulatum                ----------------------------ACGTACAGGTTTCCGTAGG-TG
m.bosniacum                 --------------------------------------TTCCGTAGG-TG
m.tuberculiforme            --------------------------------------------------
s.polygoni-persicariae      ---------------------------------------TCCGTAGG-TG
l.emodensis                 --------------------------------------TTCCGTAGG-TG
m.holostei                  --------------------------------------TTCCGTAGG-TG
m.violaceoverrucosum        ---------TTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG-TG
m.violaceum2                --------------------------------------------------
m.violaceum3                -------CATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG-TG
m.stellariae                -CTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG-TG
m.dianthorum1               ---GGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGG-TG
m.dianthorum2               --------------------------------------TTCCGTAGG-TG
m.violaceum1                --------------------------------------------------
m.anomalum                  --------------------------------------TTCCGTAGG-TG
b.abstrusa                  --------------------------------------TTCCGTAGG-TG
b.vuyckii                   --------------------------------------TTCCGTAGG-TG
u.fluitans                  --------------------------------------------------
u.brefeldii                 --------------------------------------------------
                                                                              

m.kuehneanum                GACCTGCGGAAGGATCATTAGTGAA-TTTATAGCGTA-CCTGTTTAACCA
m.shastense                 ----------CGAGGCAATA------------------CCTGTTT-ACCA
m.scabiosae                 AACCTGCGGAAGGATCATTAGTGAA-AAAATAGCGTA-CCTGTTTAACCA
m.scorzonerae               ----------------------------------------TGTTTAACCC
m.reticulatum               -----------GGATCATTAGTGAA-TTTTTAGCGTA-CCTGTTTAACCA
m.stygium                   ------------------TAGTGA--TTTTTAGCGTA-CCTGTTTAACCA
m.parlatorei                AACCTGCGGAAGGATCATTAGTGAA--TTTTAGCGTA-CCTGTTTAACCA
m.betonicae                 AACCTGCGGAAGGATCATTAGTGAA-TTTTTAGCGTA-CCTGTTTAACCA
m.intermedium               AACCTGCGGAAGGATCATTAGTGAA-TTTTTAGCGTA-CCTGCTTAACCA
m.onopordi                  AACCTGCGGAAGGATCATTAGTGAA-TTTTTAGCGTA-CCTGTTTAACCA
m.bistortarum               A-CCTGCGGAAGGATCATTAGTGAA-TATATAGCGTC-CTTGTTTAACCA
m.nepalense                 AACCTGCGGAAGGATCATTAGTGAA-TATATAGCGTA-CTTGTTTAACCA
m.pustulatum                AACCTGCGGAAGGATCATTAGTGAA-AATTTAGCGTACCCTGTTTAACCA
m.bosniacum                 AACCTGCGGAAGGATCATTAGTGAA-AATTTAGCGTA-TCTGTTTAACCA
m.tuberculiforme            -----GCGGAAGGATCATTAGTGAA-TAAATAGCGTA-CCTGTTTAACCA
s.polygoni-persicariae      AACCTGCGGAAGGATCATTAGTGAA-------------ACTG--------
l.emodensis                 AACCTGCGGAAGGATCATTAGTGAA-TATATAGCGTA-CCTGTTTAACCA
m.holostei                  AACCTGCGGAAGGATCATTAGTGAATATATTAGCGTA-CCTGTTTAACCA
m.violaceoverrucosum        AACCTGCGGAAGGATCATTAGTGAA-TATATAGCGCA-CCTGTTTAACCA
m.violaceum2                -------------------------------AGCGTA-CCTGTTTAACCA
m.violaceum3                AACCTGCGGAAGGATCATTAGTGAA-TATATAGCGTA-CCTGTTTAACCA
m.stellariae                AACCTGCGGAAGGATCATTAGTGAA-TTTATAGCGTA-CCTGTTTAACCA
m.dianthorum1               AACCTGCGGAAGGATCATTAGTGAA-TTTATAGCGCA-CCTGTTTAACCA
m.dianthorum2               AACCTGCGGAAGGATCATTAGTGAA-TTTATAGCGCA-CCTGTTTAACCA
m.violaceum1                --------------------------------GCGCA-CCTGTTTAACCA
m.anomalum                  AACCTGCGGAAGGATCATTAGGTGAATCTATAGCGCA-CCTGTTTAACCA
b.abstrusa                  AACCTGCGGAAGGATCATTAGTGAA---TATAGCGCA-CCTTTTTAACAA
b.vuyckii                   AACCTGCGGAAGGATCATTAGTGAA---TATAGCGCA-CCTTTTTAACAA
u.fluitans                  ---------AAGGATCATTAATGAATTTTTAGGTGAA-ATCTTTTAACAG
u.brefeldii                 ----------------------------------------TTTTTAACAA
                                                                              

m.kuehneanum                G-GGCGTG---CCTCTCAC-TTTTCAAACTCTG-TGCACTCAATAA----
m.shastense                 G-GGCGTGTA-CCTCTCAC-TTTTCAAACTCTGTTGCACTTA--------
m.scabiosae                 G-GGCGTG-A-CCTCTCACTTTTTCAAACTCTG-TGCACTTC--------
m.scorzonerae               GAAAAGTG-A-CCTCTCAC-TTTTCAAACTCTT-CGCACCCA--------
m.reticulatum               G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACCCT--------
m.stygium                   G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
m.parlatorei                G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTTA--------
m.betonicae                 G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACCCA--------
m.intermedium               G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACCCA--------
m.onopordi                  G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACCCA--------
m.bistortarum               A-GGCGTG-A-CCTCTCAC--TTTCAAACTCTG-TGCATTTT--------
m.nepalense                 A-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
m.pustulatum                G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
m.bosniacum                 G-GACGCG-ACCCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
m.tuberculiforme            G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
s.polygoni-persicariae      ---------A-CCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
l.emodensis                 G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTAT--------
m.holostei                  G-GGCGTG-A-CCTCTCACTTTTTCAAACTCTG-TGCACCTA--------
m.violaceoverrucosum        G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTTC--------
m.violaceum2                G-GGCGTG-A-CCTCTCAC--TTTCAAACTCTG-TGCACTTC--------
m.violaceum3                G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACTC---------
m.stellariae                G-GGCGTG-A-CCTCTCACTTTTTCAAACTCTG-TGCACTTC--------
m.dianthorum1               G-GGCGTG-A---CCTCACTTTTTCAAACTCTG-TGCACTTT--------
m.dianthorum2               G-GGCGTG-A---CCTCACTTTTTCAAACTCTG-TGCACTTC--------
m.violaceum1                G-GGCGTG-A---CCTCAT-TTTTCAAACTCTG-TGCACTTC--------
m.anomalum                  GGGACGTG-AACCTCTCAC-TTTTCAAACTCTG-TGCACTT---------
b.abstrusa                  G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACACTT-------
b.vuyckii                   G-GGCGTG-A-CCTCTCAC-TTTTCAAACTCTG-TGCACATTT-------
u.fluitans                  ATTCACTG-ACCCTTTCAT-TTTTCAAACTCTTGTGCATTTTATTAA---
u.brefeldii                 A-GGTGCGTGACCNTTTTTCNTTACAAACTCTTGTGCATTTTTTTTT---
                                           *     ** ********   ***            

m.kuehneanum                -----TCTTTGGTT-CAGCTTTGAGG------------GAAACGGGCTTC
m.shastense                 -----TTTTTGAT-----CAGCAAGG------------TCAAAGGGCTTC
m.scabiosae                 ----AAATTTGC---TGGCTATAGGAAA-------GGGTCGATTAACTT-
m.scorzonerae               -----TTTG---------TGGCAAGG---A-----------AACGGAG--
m.reticulatum               -----TATG---------TGGCAAGG---------------AAAGGGGGT
m.stygium                   -----CAAATTTGC----TGGCAGGT----CTTTAGGGA--AAGGGTG--
m.parlatorei                -----TTTGGT-------CGGCAAGG---------------AAAGAGCGA
m.betonicae                 -----TTGATG-------TGGCAAGGAAAGGATTGGGCCTAAACACCC--
m.intermedium               -----T-GATG-------TGGCAAGGAAAGGATTGGGCT--AACACCCG-
m.onopordi                  -----TTAG---------TGGCAAGG--------------AAAGGGAAA-
m.bistortarum               -----TT-----------TGGCAAGG----------AATAAGAAGGAAAT
m.nepalense                 -----T------------TGGCAAGTTGGAAGTT----------------
m.pustulatum                -----T------------TGGCAAGT----------GGGAAGTTCG----
m.bosniacum                 -----T------------TGGCAAGT----------TGGAGGCTCA----
m.tuberculiforme            -----T------------TGGCAAGT----------TGGAAGTT------
s.polygoni-persicariae      -----TT-----------TGGCAAGT----------TGGAAGTT------
l.emodensis                 -----T------------TGGCAAGT----------TGGAAGTTCG----
m.holostei                  -----TTCAACTTT-AGCTGGCGCAA------ATTAGGGAAATGGGCTTC
m.violaceoverrucosum        ------------------CAATGGGG----GGGCCGAGGAAAGGCGA---
m.violaceum2                ------------------TAATGGGG----GGGCCAAGGAAAGGCGA---
m.violaceum3                ------------------TAATGGGG----GGGCCAAGGAAGGGCGA---
m.stellariae                ------------------TAATGGGG----GGGCCAAGGAAAGGCGA---
m.dianthorum1               ------------------TAATGGGG----GGGCCCAGG-AAGGGCG--A
m.dianthorum2               ------------------TAATGGGG----AGGCCCAGGAAAGG------
m.violaceum1                ------------------TAAAGGGC----CGGTCGAGGAAAGGT-----
m.anomalum                  ------------------CAATTGGG---CTGGCCTAAGCAACGGGCGAT
b.abstrusa                  -----TT-----------TGGCAATG---A---------GGGAGTGTCTT
b.vuyckii                   -----TTT----------TGGCAATG-------------AGGAGTG-TCT
u.fluitans                  ------------------TGGTGACT-------------------AAGTA
u.brefeldii                 ------------------TGGTGATTAGTAG---------------AAAA
                                                                              

m.kuehneanum                ATTG----------------------------CCTTTAGT----------
m.shastense                 AT------------------------------TGCCTGGA----------
m.scabiosae                 --------------------------------CGCTCGGA----------
m.scorzonerae               ATTCATTT------------------------CTCCCGGA----------
m.reticulatum               ATTCGT--------------------------CTCCCGGA----------
m.stygium                   -----------------------TCGAAAGGCATCTTGGA----------
m.parlatorei                ATCGGCGTTTGCG----------CGCCTTTT-CGCTTGGA----------
m.betonicae                 --------------------------------TTTCTGGA----------
m.intermedium               --------------------------------TTTCTGGA----------
m.onopordi                  --------------------------------TTCCCGGA----------
m.bistortarum               TCG-----------------------------TTTCTAGATTTGA-----
m.nepalense                 ------------------------------CGCTTCTA------------
m.pustulatum                --------------------------------CTTTCG------------
m.bosniacum                 ------------------------------CGCTTCTA------------
m.tuberculiforme            ------------------------------CGCTTCTA------------
s.polygoni-persicariae      ------------------------------CGCTTCTA------------
l.emodensis                 --------------------------------CTTCTG------------
m.holostei                  GG------------------------------TCCCCGGA----------
m.violaceoverrucosum        TTAGCTT-------------------------CGCCTGGA----------
m.violaceum2                TTAGCTC-------------------------CGCCCGGA----------
m.violaceum3                TTAACTT-------------------------TGCCTGGA----------
m.stellariae                TTAGCTT-------------------------TGCCAGGA----------
m.dianthorum1               TTAGCTT-------------------------CGTCTGGA----------
m.dianthorum2               --------------------------------CGACTGGA----------
m.violaceum1                --------------------------------CACTCGGA----------
m.anomalum                  TT------------------------------CGCCTGGA----------
b.abstrusa                  TTA---------------------------GACCTCTG------------
b.vuyckii                   TTAA--------------------------GATCTCCG------------
u.fluitans                  AT------------------------------TCTCCGGA----------
u.brefeldii                 ATC-----------------------------TTTACGGATTTTAGATAC
                                                                              

m.kuehneanum                -ACTTGATTGCCGTTCCAATCATTCT-TT--ATG--AAACAT---TGAAA
m.shastense                 -ACTCTG--------CAGGTCAATCA-TT--ATT--AAACAT---TAAAA
m.scabiosae                 -ACT-TG-----CGCCGGCTCATC---TT--ATT--AAACAT---T-TAA
m.scorzonerae               -ACT-CG--------CGGCTCATT---TT--ATT--AAACAT-----TAA
m.reticulatum               -ACT-TG--------CGGCTCATT---TT--ATT--AAACAT---T-AAA
m.stygium                   -ACT-TGAGACGCTCCGGCTCATTT--TT--ACC--AAACAT---T-TAA
m.parlatorei                -ACT-TG--------CGGCTCATT---TT--ACA--AAACAT---T-AAA
m.betonicae                 -ACT-TG--------CGACTCACT---TT--ATA--AAACAC---GCAAA
m.intermedium               -ACT-TG--------CGGCTCACT---TT--ATT--AAACAT---T-AAA
m.onopordi                  -ACT-TG--------CGGCTCATT---TT--ATT--AAACAT---T-AAA
m.bistortarum               -ACT-TG--------CGGCTCAT----TT--ATT--AAACAC---TTAAA
m.nepalense                 -ACT-TG--------CGGCTCATTT--TT--ATT--AAACAT---T---A
m.pustulatum                -ACT-TG--------CGGCTCAT----CT--ATA--AAACAC---T-CAA
m.bosniacum                 -ACT-TG--------CGGCTCAT--------ATATAAAACAC---TATAA
m.tuberculiforme            -ACT-TG--------CGGCTCAT----TT--ATT--AAACAC---T---T
s.polygoni-persicariae      -ACT-TG--------CGGCTCATTA--TT--AAT--AAACAC---T---T
l.emodensis                 -ACT-TG--------CGGCTCATTTA-AT-------AAACAT---T----
m.holostei                  -ACT-TG-CGCGCGCCGGCTGATCGT-TTTAATTACAAACAT---T-TAA
m.violaceoverrucosum        -CTT-TG-----TGCCCCCTCGTT---TT--ATT--AAACAT---T-AAA
m.violaceum2                -ATT-CG-----TGCCCGCTCGTT---TT--ATT--AAACAT---T-AAA
m.violaceum3                -ATT-CG-----TGCCCGCTCGTC---TT--ATG--AAACAT---T-TAA
m.stellariae                -ATT-GG-----TGCCCGCTCGTT---TT--ATT--AAACAT---T-TAA
m.dianthorum1               -ATG-CG-----TGCCCGCCCGTT---TT--ATT--AAACAC---T-TAA
m.dianthorum2               -ATG-CG-----TGCCCACTCGTT---TT--ATT--AAACAT---T-TAA
m.violaceum1                -ACT-GG-----TGCCGGCTCGTT---GT--ATT--AAACAT---T-AAA
m.anomalum                  -ACTTGG-----CGCGGGCTCATC---TTATCTTCAAAACAT---A-TCA
b.abstrusa                  -ATT-TG--------CGGCTCATT---TT--A----AAACACAACC----
b.vuyckii                   -ATT-TG--------CGGCTCATT-------ATA--AAACAT---G-ATC
u.fluitans                  -ATC---------ACTTTTTCACGTCTTTCATTTAAAAAAACTT-T-AAT
u.brefeldii                 CATTTCA--------CGGCTCAT-T--TT---TTAAAAACAC---T-AAT
                                                                *** *         

m.kuehneanum                AAGTCAAC-GTA-----TG----TCAAAGAAAT---TTAATAAA---CAA
m.shastense                 AG-TCATT-GTA-----TG----TCAAAGAAAT---TTAATAAC----AA
m.scabiosae                 AG-TTAAT-GTA-----TG----TCAAAGAAAT---TTAATAAC---AAA
m.scorzonerae               AG-TCAAT-GTA-----TG----TTAAAGAAAC---TTAATAAC---AAA
m.reticulatum               AG-TCAAC-GTA-----TG----TCAAAGAAAT---TTAATAAC---AAA
m.stygium                   AG-TCATT-GTA-----TG----TCAAAGAAAT---TTAATAAC---AAA
m.parlatorei                AG-TCATT-GTA-----TG----TCAAAGAAAT---TTAATAACA--AAA
m.betonicae                 AG-TCAAT-GTA-----TGT---CAAAAGAAAT---TTAATAAC---AAA
m.intermedium               AG-TCAAT-GTA-----TG----TCAAAGAAAT---TTAATAACA--AAA
m.onopordi                  AG-TCAAT-GTA-----TG----TCAAAGAAAT---TTAATAACA--AAA
m.bistortarum               AAGTCAAT-GTA-----TG----TTAAAGAAAT---TTAATAAT---AAG
m.nepalense                 AG-TCAAT-GTA-----TG----TTAAAGAAAT---TTAATAATC--AAA
m.pustulatum                AG-TCAAT-GTA-----TG----TCAAAGAAAT---TTAATAATC--AAA
m.bosniacum                 AG-TCAAT-GTA-----TG----TTAAAGAAAT---TTAATAATC--AAA
m.tuberculiforme            AG-TCAAT-GTA-----TG----TTAAAGAAAT---TTAATAAC---AAA
s.polygoni-persicariae      AG-TCATT-GTA-----TG----TTAAAGAAAT---TTTATAAC---AAA
l.emodensis                 AG-TCAAA-GTA-----TG----TTAAAGAAAT---TTTATAAC---AAA
m.holostei                  AG-TCAGC-GTA-----TG----TCAAAGGAAW---TTTATTACC--AAA
m.violaceoverrucosum        AG-TCAACTGTA-----TGGG--AAATAGAAATG-ATACATAACCA-AAA
m.violaceum2                AG-TCAACTGTA-----TGGG--AAAAAGAAATG-ATA-ATAACC--AAA
m.violaceum3                AG-TCACTGGTA------GGG--GAAAAGAAATG-ATAAATAACA--AAA
m.stellariae                AG-TCAATGGTA-----TGGGA-AAAAAGAAAT---TATATAAC---AAA
m.dianthorum1               AG-TCAGTCGTA-----TGGGC-ATAAAGAAAT---GATATAAC---AAA
m.dianthorum2               AG-TCAATTGTA-----TGGGA-ATAAAGAAAT---GATATAACA--AAT
m.violaceum1                AGAGCAAT-GTAAATG-GGGGGGAATAAAAAATG--GAAATAACAA-AGA
m.anomalum                  AG-TCACT-GGA-----TG----TCAAAGAAAT---TTAATAACGAAAAA
b.abstrusa                  AG-TCAGA-GTA-----TG----TTAAAGAAAT----TTATACC---AAA
b.vuyckii                   AG-TTAAA-GGA-----TG----TTAAAGAAAT----TTATAAC---AAA
u.fluitans                  AG-TCAGA-GTA-----TG----TTTTAAAAAT---TTTATAATT--AAA
u.brefeldii                 AG-TCAGA-GTA-----TG----TT-TAAAAAT---TTTATAATT-ATAA
                            *    *   * *      *        *  **       **         

m.kuehneanum                AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.shastense                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.scabiosae                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.scorzonerae               AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.reticulatum               AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.stygium                   AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.parlatorei                AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.betonicae                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.intermedium               AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.onopordi                  AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.bistortarum               AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.nepalense                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.pustulatum                AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.bosniacum                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.tuberculiforme            AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
s.polygoni-persicariae      AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
l.emodensis                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.holostei                  AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.violaceoverrucosum        AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.violaceum2                AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.violaceum3                AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.stellariae                AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.dianthorum1               AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.dianthorum2               AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
m.violaceum1                AAAAACTTTCAACAACGGTCTCTTGGGCTCTCGCATCGATA-AAAAACGC
m.anomalum                  AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
b.abstrusa                  AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
b.vuyckii                   AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
u.fluitans                  AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
u.brefeldii                 AAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATG-AAGAACGC
                            ******************     * ***************  ** *****

m.kuehneanum                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.shastense                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.scabiosae                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.scorzonerae               AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.reticulatum               AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.stygium                   AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.parlatorei                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.betonicae                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.intermedium               AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.onopordi                  AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.bistortarum               AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.nepalense                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.pustulatum                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.bosniacum                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.tuberculiforme            AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
s.polygoni-persicariae      AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
l.emodensis                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.holostei                  AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.violaceoverrucosum        AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.violaceum2                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.violaceum3                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.stellariae                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.dianthorum1               AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.dianthorum2               AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.violaceum1                AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
m.anomalum                  AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
b.abstrusa                  AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
b.vuyckii                   AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
u.fluitans                  AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
u.brefeldii                 AGCGAAATGTGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAA
                            **************************************************

m.kuehneanum                TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.shastense                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.scabiosae                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.scorzonerae               TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.reticulatum               TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.stygium                   TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.parlatorei                TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.betonicae                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.intermedium               TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.onopordi                  TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.bistortarum               TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.nepalense                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.pustulatum                TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.bosniacum                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGTGAGCATGTCTGTTT
m.tuberculiforme            TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
s.polygoni-persicariae      TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
l.emodensis                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.holostei                  TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.violaceoverrucosum        TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.violaceum2                TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.violaceum3                TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.stellariae                TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.dianthorum1               TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.dianthorum2               TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
m.violaceum1                TCTTTGAACGCATCTTGCGCTTGCTGGTATTCCGGCAAGCATGTCTGTTT
m.anomalum                  TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
b.abstrusa                  TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
b.vuyckii                   TCTTTGAACGCATCTTGCGCTTGCTGGTATTCCGGCAAGCATGTCTGTTT
u.fluitans                  TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
u.brefeldii                 TCTTTGAACGCATCTTGCGCTCGCTGGTATTCCGGCGAGCATGTCTGTTT
                            ********************* *************  *************

m.kuehneanum                GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCTTTGTTGAG-ATTTTG
m.shastense                 GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCAT--------ATTTTG
m.scabiosae                 GAGTGTCGTGAACTCTTCAACCC-CTAATTTTTCTTAAGTGAG-ATTTTG
m.scorzonerae               GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCTTTATTGAG-ATTTTG
m.reticulatum               GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCTGTATGGGA-ATTTTG
m.stygium                   GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCTTTATTGAG-ATTTTG
m.parlatorei                GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCTTTATTGAG-ATTTTG
m.betonicae                 GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTCTTGATTGAG-ATCTTG
m.intermedium               GAGTGTCGTGAACTCTTCAACCCTCCAATTTTTCTTTATTGAG-ATTTTG
m.onopordi                  GAGTGTCATGAACTCTTCAACCC-CCAATTTTTCTGGATTGAG-ATTTTG
m.bistortarum               GAGTGTCGTGAACTCTTCAACCT-CTAATTTTTCTTTATTGAG-ATTTTA
m.nepalense                 GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTC--TAACGAG-ATTTTG
m.pustulatum                GAGTGTCGTGAACTCTTCAACCC-CCCCTTTTTC--TAACGAG-ATTTGG
m.bosniacum                 GAGTGTTGTGAACTCTTCAACCC-CCAATTTTTC--TAACGAG-ATATTG
m.tuberculiforme            GAGTGTCATGAATTCTTCAACCC-CCAATTTTTC--TAACGAG-ATTTTG
s.polygoni-persicariae      GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTC--TAACGAG-ATTTTG
l.emodensis                 GAGTGTCGTGAACTCTTCAACCC-CCAATTTTTC--TAACGAG-ACTTTG
m.holostei                  GAGTGTCGTGAACTCTTCAACCC-CCCATTTTTCTTTAGTGAG-ATTTTG
m.violaceoverrucosum        GAGTGTCGTGAACTCTTCAACCC-CCCCTTTTTCTTTCTAGAG-ATGGGG
m.violaceum2                GAGTGTCGTGAACTCTTCAACCC-CCCCTTTTTCCTTCTGGAG-ATGGGG
m.violaceum3                GAGTGTCGTGAACTCTTCAACCC-CCCCTTTTTC-TTATCGAG-ATCGGG
m.stellariae                GAGTGTCGTGAACTCTTCAACCC-CCCCTTTTTC-TTATGGAG-ATTGGG
m.dianthorum1               GAGTGTCGTGAACTCTTCAACCC-CCCCCTTTTTCTTATGGAG-ACTGGG
m.dianthorum2               GAGTGTCGTGAACTCTTCAACCC-CCCCTTTTTTCTTATGGAG-ATTGGG
m.violaceum1                GAGTGTTGTGAACTGTTCAACCC-CCCATTTTTCTTTACTGAG-ATTTGG
m.anomalum                  GAGTGTCGTGAACTGTTCAACCCCCCGATTTTTCTTTTGGGAA-AGTTGG
b.abstrusa                  GAGTGTTGTGAACTCTTCAACCC-CCGCTTTTTCTTAATTGAG-ATTGCG
b.vuyckii                   GAGTGTCGTGAACTCTTCAACCC-CCACTTTTTCTTTATTGAG-ATTGCG
u.fluitans                  GAGTGTCGTGAACTCTTCAAATC-------CTCCCTTA------ATTAGG
u.brefeldii                 GAGTGTCGTGAAATCTTCAACCCTTTAATTTTTTTATAATGAGAATTTTA
                            ******  **** * *****           *            *     

m.kuehneanum                GCGCGGCTTGGTTTCTGAACGCTT----TGCTGGAC------TTTACTCT
m.shastense                 GCGCGGCTTGGTTTCTGAACGCTT----TGCTGGAT------------TA
m.scabiosae                 GTGCGGCTTGGTTTCTGAACGCC-----TGCTGGAC--------------
m.scorzonerae               GCGCGGCTTGGTTTCTGAACGTTTT---TGCTGGAA----------ACCA
m.reticulatum               GCGCGGCTTGGTTTCTGAACGTTTCA--TGCTGGAT----------TCTA
m.stygium                   GCGCGGCTTGGTTTCTGAACGTC-----TGCTGGAC---------TAACC
m.parlatorei                GCGTGGCTTGGTTTCTGAACGCT-----TGCTGGAT----------GACC
m.betonicae                 GCGCGGCTTGGTTTCTGAACGCTT----TGCTGGAT---ACACCTTTCCC
m.intermedium               GCGCGGCTTGGTTTCTGAACGCTT----TGCTGGAT---ACACCTT-CTC
m.onopordi                  GTGCGGCTTGGTTTCTGAACGTTTT---TGCTGGAA----------ACCG
m.bistortarum               GTAAGGCTTGGATTTTGAATGC------TGCTGAAT--------------
m.nepalense                 GTGTGGCTTGGTTTTTGAGCGCTG----TGCTTTGA--------------
m.pustulatum                GTGTGGCTTGGTTTTTGAGCGCCT----TGCTTAAC--------------
m.bosniacum                 GTGTGGCTTGGTTTTTGAGCGCTTT---TGCTTAAT--------------
m.tuberculiforme            GTGTGGCTTGGTTTTTGAGCGCTT----TGCTGAAT--------------
s.polygoni-persicariae      GTGTGGCTTGGTTTCTGAGCGC------TGCTGAAT--------------
l.emodensis                 GAGTGGCTTGGTTTCTGAGCGTTT----TGCTTGAA--------------
m.holostei                  GCGCGGCTTGGTTTCTGAACGTT-----TGCTGGAC--------------
m.violaceoverrucosum        GTGTGGCTTGGTTTCTGAACGTT-----TGCTGGAC--------------
m.violaceum2                GCGTGGCTTGGTTTCTGAATGTT-----TGCTGGAC--------------
m.violaceum3                GTGCGGCTTGGTTTCTGAATGGT-----TGCTGGAC--------------
m.stellariae                GCGCGGCTTGGTTTCTGAACGTT-----TGCTGGAC-------TGGGATT
m.dianthorum1               GTGCGGCTTGGTTTCTGAACGCT-----TGCTGGAC-------TGGAATT
m.dianthorum2               GCGTGGCTTGGTTTCTGAACGTT-----TGCTGGAC-------TGGGATT
m.violaceum1                GTGTG-CTTGGTTTCTGAACGCT-----TGCTGGGC-------TGGTCTC
m.anomalum                  GCGTGGCTTGGATTCTGAACGCT-----TGCTGGACCG---CATCTTCTT
b.abstrusa                  GTGTGGCTTGGTTTTTGAGCTT------TGCTGGAC--------------
b.vuyckii                   GTGTGGATTGGTTTTTGAGCTC------TGCTGGAC--------------
u.fluitans                  AAGTGATTTGGTTTTTGAACAT------TGTTGGAT--------------
u.brefeldii                 ATGTGGTTTGGTTTTTGAATAT------TGC-------------------
                                *  **** ** ***          **                    

m.kuehneanum                CCTT-TGGGGGG----------AAAAGTCG-----AAGCTCGTTCGTAAT
m.shastense                 CCTT-TGGG---------------AAATCG-----AAGCTCGTTCGTAAT
m.scabiosae                 -----------------TTGTTAAAAGTCG------AGCTCGTTCGTAAT
m.scorzonerae               CCTT-CGGGTGG-------------AATCG-----AAGCTCGTTCGTAAT
m.reticulatum               CCCT-CGGGTGG-------------AATCG-----AAGCTCGTTCGTAAT
m.stygium                   CCTT-TTTGGGG---------CACCCGTCG-----AAGCTCGTTCGTAAT
m.parlatorei                CCT--CGGG--------------GAAATCG-----AAGCTCGTTCGTAAT
m.betonicae                 CGCT-TGCGGGG-------TTTGGCAATCG-----AAGCTCGTTCGTAAT
m.intermedium               CGCT-TGCGGGG-------TTCGGCAATCG-----AAGCTCGTTCGTAAT
m.onopordi                  CCCT-CGGGTGG-------------AATCG-----AAGCTCGTTCGTAAT
m.bistortarum               --------------TTGTTTATTCAAATTGT----TAGCTCGTTCGTAAT
m.nepalense                 ----------------------TTAATTCA-----AAGCTCGCTCGTAAT
m.pustulatum                -TTCGCT-T--------------------------AAGCTCGCTCGTAAT
m.bosniacum                 ---------------------CTCGTATTA------AGCTCGCTCGTAAT
m.tuberculiforme            ---------------------CTAGTATTC-----TAGCTCGCTCGTAAT
s.polygoni-persicariae      --------------------CTTCGGATTGT----TAGCTCGCTCGTAAT
l.emodensis                 ----------------------TTTTATTC-----AAGCTCGCTCGTAAT
m.holostei                  --TT-CTGAACG------------AAGTCG-----AAGCTCGTTCGCAAT
m.violaceoverrucosum        --------------------TGCCAAGTCG-----AAGCTCGTTCGTAAT
m.violaceum2                -----------------TTTTTGAAAGTCG-----AAGCTCGTTCGTAAT
m.violaceum3                ----------------TTTTCTAAAAGTCG-----AAGCTCGTTCGTAAT
m.stellariae                CCTT-TTGGGGGA------TTCTAGAGTCG-----AAGCTCGTTCGTAAT
m.dianthorum1               CCTT-TCGGGGGA------TTCCAAGGTCG-----GAGCTCGTTCGTAAT
m.dianthorum2               CCTT-TCGGGGGA------TTCTAACGTCG-----GAGCTCGTTCGTAAT
m.violaceum1                CCTT----GGGA-------TTCCAAAGTCG-----AAGCTCGTTTGTAAT
m.anomalum                  CCCTGTATGGGGGG--GGAGACCCAGGTCG-----AAGCTCGTTCGTAAT
b.abstrusa                  CCTT-TTTG----------------GGTCG-----GAGCTAGCTCGTAAT
b.vuyckii                   CCTTT-TGGG----------------GTCG-----GAGCTAGCTCGTAAT
u.fluitans                  ------------------TATTATTAATCG-----AAACTTGTTCGTAAT
u.brefeldii                 --------------------------------------------------
                                                                              

m.kuehneanum                ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.shastense                 ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.scabiosae                 GCATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.scorzonerae               ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.reticulatum               GCATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.stygium                   ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.parlatorei                ACATTAGCATCCTAAT-CTTCGAGACCAGATTGACTCGGCGTAATAGACT
m.betonicae                 ACATTAGCACCCTAAC-CTTTGAGATCAGATTGACTCGGCGTAATAGACT
m.intermedium               ACATTAGCATCCTAAT-CTTCGAGACCAGATTGACTCGGCGTAATAGACT
m.onopordi                  GCATTAGCATCCTAAT-CTTCGAGATCAGCTTGACTCGGCGTAGTAGACT
m.bistortarum               ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.nepalense                 ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.pustulatum                ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.bosniacum                 ACATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGATT
m.tuberculiforme            GCATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
s.polygoni-persicariae      TCATTAGCATCCTAATCCTTCGAGATCAGATTGACTCGGCGTAATAGACT
l.emodensis                 ATATTAGCATCCTAAT-CCTCGAGATCAGATTGACTCGGCGTAATAGACT
m.holostei                  GCATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAGTAGACT
m.violaceoverrucosum        GCATTAGCATCCTAAC-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.violaceum2                GCATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.violaceum3                GCATTAGCATCCTAAC-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.stellariae                GCATTAGCATCCTAAT-CTTCGAGATCAGATTGACTCGGTGTAATAGACT
m.dianthorum1               GCATTAGCATCCTAAC-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.dianthorum2               GCATTAGCATCCTAAC-CTTCGAGATCAGATTGACTCGGCGTAATAGACT
m.violaceum1                GCATTAGCATCCTAAT-CTTCGA-ATCAGATTGACTCGGCGTAATAGACT
m.anomalum                  ACATTAGCATCCTAAT-CTTCGAGATCAGATCGACTCGGCGTAATAGACT
b.abstrusa                  TCATTAGCATCCCTAT--TTCGAGATCAGATTGACTCGGTGTAATAGAGT
b.vuyckii                   TCATTAGCATCCCTAT--TTCGAGATCAGATTGACTCGGCGTAATAGACT
u.fluitans                  AGATTAGCATTTCCCCATTTCGAGATCAGATTGACTCGGCGTAATAGATT
u.brefeldii                 ----TGGCATC------TTTC-----------------------------
                                * ***          *                              

m.kuehneanum                ATT-CGCTGAGGA-CACGG--------ATTCCTTTAG---GGGAGTTGGT
m.shastense                 ATT-CGCTGAGGA-CACGGCT------TCCCCGTCAA--AAGGGAGTGGT
m.scabiosae                 ATT-CGCTGAGGA-CATGGC-------ACCCCGTCAA-AAAGGGTGTTGT
m.scorzonerae               ATT-CGCTGAGGA-CATGGC-------GTCCCCTTAA-AAAGGGAGTCGT
m.reticulatum               CTT-CGCTGAGGA-CATGGC-------TCCCCGTCAACAAAGGGAGTTGT
m.stygium                   ATT-CGCTGAGGA-CATGGC-------ACCCCCTTAA-AAAGGATGTTGT
m.parlatorei                ATT-CGCTGAGGA-CATAGC-------ACCCCGTAAA-AAAGGGCGTTCT
m.betonicae                 ATT-CGCTGAGGA-CATGGC-------ACCCTGTAGA-AAAGGGAGCTGT
m.intermedium               ATT-CGCTGAGGA-CATGGC-------GCCCCGTCAA-AAAGGGAGTCGT
m.onopordi                  ATT-CGCTGAGGA-CATGGC-------GCCCTGTCAA--AAGGGAGTTGT
m.bistortarum               ATT-CGCTGAGGATTATGTT--------TTTTATTAA---------GCAT
m.nepalense                 ATT-CGCTGAGGA-CATGTC------------GTAAAAAA------GCAT
m.pustulatum                ATT-CGCTGAGGA-CATGCC---------CTTATAAG----------CAT
m.bosniacum                 ATT-CGCTGAGGA-TATGCC----------CTAATAA---------GCAT
m.tuberculiforme            ATT-CGCTGAGGA-TATGCT---------TTTATTAG----------CAT
s.polygoni-persicariae      ATT-CGCTGAGGA-CATGCC----------CTAATAA---------GCGT
l.emodensis                 ATT-CGCTGAGGA-CATGCC------------TTTAA-------AAGCAT
m.holostei                  ATT-CGCTGAGGA-CATGGC-------AACCCGTTAAACAGGGTAGCCGT
m.violaceoverrucosum        ATT-CGCTGAGGA-CAGGGC-------ATCCCTTTTA-CGGGGGTGTCCT
m.violaceum2                ATT-CGCTGAGGA-CATGGC-------ATCCCTTTA--CCGGGGTGTAAT
m.violaceum3                ATT-CGCTGAGGA-CATGGC-------ATCCCTTTA--CCGGGGTGTCAT
m.stellariae                ATT-CGCTGAGGA-CATGGC-------ATCCCTTTA--CCGGGGTGTAAT
m.dianthorum1               ATT-CGCTGAGGA-CATGGC-------ATCCCTTTA--CTGGGGTGTGAT
m.dianthorum2               ATT-CGCTGAGGA-CATGGC-------ATCCCTTTA--CTGGGGTGTGAT
m.violaceum1                ATTCCGCTGAGGA-CATGGC-------ACCTGTTAA--CTCGGGTGTGGT
m.anomalum                  ATT-CGCTGAGGA-CATGGC-------ACCCCCTTAAAAAAGGGCGTTAT
b.abstrusa                  ATT-CACTGAGGA-CATTGG--------------------TGCAAGGCGT
b.vuyckii                   ATT-CGCTGAGGA-CATTGC--------------------CGCAAGGTGT
u.fluitans                  ATT-CGCTGAGGA-TTTATG-------GAAACATAAA-------------
u.brefeldii                 --------------------------------------------------
                                                                              

m.kuehneanum                G-GCTGGACTTG--G-AAAGCTGGACGCTCACAAA--ACCCGA-------
m.shastense                 G-GCTGGACTTG--G-AAAGCTGGAAGCTTAGAAA--ACCCGA-------
m.scabiosae                 G-GCTGGACTTG--G-AAAGTTGGAAGCTTACAAA--CCCCGA-------
m.scorzonerae               G-GCTGGACTTG--G-ACAGCTGGAAGCTTACAAA--ACCCGA-------
m.reticulatum               GAGCTGGCCTGG--G-AAAGTTGGAAGCTTCCAAA--ACCAGAG------
m.stygium                   G-GCTGGACTTG--G-AAAGCTGGAAGCTTACAAA--ACCCGAC------
m.parlatorei                G-GCTGGACTTG--G-AAAGCTGGAAGCTTACAAA--ACCCGA-------
m.betonicae                 G-GCTGAACTTG--A-AAAGTTGGAAGCTTATAAA--ACCCGA-------
m.intermedium               G-GCTGGACTTG--G-AAAGTTGGAAGCTTACAAA--ACCTGA-------
m.onopordi                  G-GCTGGACTTG--G-AAAGTTGGAAGCTTACAAA--ACCCGAC------
m.bistortarum               AAACTGAACTTG--G-AAAATTGAAAGCTTCTAAA---ACCGAC------
m.nepalense                 G-GCTGGACTTG--A-AAAATTGAAAGCTTCTAAACCCCTC---------
m.pustulatum                G-GCTGGACTTG--G-AAAAATGGAAGCCTATAAA---CCCGAC------
m.bosniacum                 A-GCTGGACTTG--G-AAAATTGGAAGCTCATAAT--ACCCGAC------
m.tuberculiforme            A-GCTGGACTTG--G-AAAATTGGAAGCTTATAAA---CCCGAC------
s.polygoni-persicariae      G-GCTGGACTTG--A-AAAACTGGAAGCTTATAAA-ACCCCGA-------
l.emodensis                 G-GCTGGACTTG--A-AAAATTGGAAGCTTACAAA---ACCGAC------
m.holostei                  G-GCTGGACTGG--G-AAACTTGGCTGCTTACAACCCCCCCGA-------
m.violaceoverrucosum        G-GCTGGCCTGG--G-AAAAGTGGAAGCTGCTAG----CCCGGCGA---C
m.violaceum2                G-GCTGGCCTGG--G-AAAAATGGAAGCTTCTAGA-CCCCCGA------C
m.violaceum3                G-GCTGGCCTGG--G-AAAAGTGGAAGCTGCTAAA-CCCCCGA------C
m.stellariae                G-GCTGGCCTGG--G-AAAAGTGGAAGCTTATAGACCCCCCGA------C
m.dianthorum1               G-GCTGGCCTGG--GAAAAAGTGGAAGCTGCTAGA--CCCTGA------C
m.dianthorum2               G-GCTGGCCTGG--A-AAAAGTGGAAGCTGCTAGA-CCCCCAA-------
m.violaceum1                G-GCTGGCCTTG--G-AAAATTGGAAGCTTAGAAA---CCCGT------C
m.anomalum                  G-GCTGAACTGG--A-AAAGCTGGACGCTTCGAAC--CCCCGA------C
b.abstrusa                  G-GCTGAACTTG--A-----------------------------------
b.vuyckii                   G-GCTGAACTTGATA-ACAGTTGGAAGCTTCTAAC-CCCTTGA------C
u.fluitans                  --GCTGAACTTA----TGAG--GAAAGCTTCTAAT---CCCATC------
u.brefeldii                 --------------------------------------------------
                                                                              

m.kuehneanum                CAATTTAGTCAAATCATGA--TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.shastense                 CGATTTAGTCCC---------TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.scabiosae                 CAATTTAGTCAAATCATC---TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.scorzonerae               CAATTTAGTCA-ATCATTTTTAAAGA-TTAGACCTCAGATCAGGCAGGAT
m.reticulatum               AAATTTAGTCACATCATTTTTTAAGA-TGAGACCTCAGATCAGGCAGGA-
m.stygium                   AATTTTAGTCAAATCATTT--TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.parlatorei                CAATTTAGTCAAATCATTT--TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.betonicae                 CAATTTAGTCA-ATCATTTT-TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.intermedium               CAATTTAGTCA-ATCATTTTCTAAGA-TTAGACCTCAGATCAGGCAGGAT
m.onopordi                  AATTTTAGTCAAATCATC---TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.bistortarum               TA--TTAGTCAAAAAACC---TAAGA-TTAGACCTCAGACCAGATCGGTC
m.nepalense                 ----TTTGTGAAATC------TAAGA-TTAGACCTCAGATCAGATAGGAT
m.pustulatum                T--TGTAGTCAAATTAT----TAAGA-TTAGACCTCAGATCAGATAGGAT
m.bosniacum                 T--TCTAGTCA-ATACTATTTTAAGA-TTAGACCTCAGATCAGATAGGAT
m.tuberculiforme            TA--TTAGTCAAAACCC----TAAGA-TTAGACCTCAGATCAGATAGGAT
s.polygoni-persicariae      -CTTCTAGTCAAAATTTT---TAAGTCCTCACGCTCAGATCCGGCAGGAT
l.emodensis                 T--TCTAGTCAAAACCC----TAAGA-TTAGACCTCAGATCAGATAGGAT
m.holostei                  CAATTTAGTCAAATCATTTTTTAAGA-TTAGACCTCAGATCAGGCAGGAT
m.violaceoverrucosum        TAA-AAAGTCCCCACA--TTCTAAGA-TTAGACCTCAGATCAGGCAGGAT
m.violaceum2                GAT-GGAGTCCCC-----TTCTAAGA-TTAGACCTCAGATCAGGCAGGAT
m.violaceum3                TA--TTAGTCC----------AAAGA-TTAGACCTCAGATCAGGCAGGAT
m.stellariae                TA--TTAGTCCCATCATTT--TAAGA-TTAGACCTCAAATGAGGGAGGAC
m.dianthorum1               GA--TAAGTCA----CTATTCTAAGC-TTAGACCTCAGATCAGGCAGGAT
m.dianthorum2               -----TAATC-----------TAAGA-TTAGACCTCAGATCAGGCAGGAT
m.violaceum1                GGATTT---------------TAAGA-TTAGACC----------------
m.anomalum                  GAT-CTAGTCGAATC------CAAGA-TTAGACCTCAGATCAGGCAGGAT
b.abstrusa                  ---------------------TAAGAGTTTG-------------------
b.vuyckii                   AATACTAGTCA---CTTTTCATAAGA-TTAGACCTC--------------
u.fluitans                  CTTTCTAAC------------TAAGATTTAGACCTCAGATCAGGCAGGAT
u.brefeldii                 --------------------------------------------------
                                                                              

m.kuehneanum                A--CCCGCTGAACTT-AAGCATATCAATAAGC-----------
m.shastense                 TA-CCCGCTGAACTT-AAGCATATCATTAAG------------
m.scabiosae                 TA-CCCGCTGAACTT-AAGCATATCAATAAGC-----------
m.scorzonerae               TA-CCCGCTGAACTTA---------------------------
m.reticulatum               TA-CCCGCAA---------------------------------
m.stygium                   TA-CCCGCGAA--------------------------------
m.parlatorei                TA-CCCGCTGAACTT-AAGCATATCAATAAG------------
m.betonicae                 TA-CCCGCTGAACTT-AAGCAT---------------------
m.intermedium               TA-CCCGCTGAACTT-AAG------------------------
m.onopordi                  TA-CCCGCTGAACTT-AAGCA----------------------
m.bistortarum               CC-----------------------------------------
m.nepalense                 A------------------------------------------
m.pustulatum                T------------------------------------------
m.bosniacum                 TA-CCCGCTGAACTT-AAG------------------------
m.tuberculiforme            TA-CCCGCTGAACTT-AAGCA----------------------
s.polygoni-persicariae      TACCCCGCTGAACTTAAAGCATATCAATAAGCGGAGGA-----
l.emodensis                 TA-CCCGCTGAACTT-AAGCATATCAATAAG------------
m.holostei                  TA-CCCGCTGAACTT-AAGCATATCAATAAG------------
m.violaceoverrucosum        TA-CCCGCTGAACTT-AAGCATATCAATA--------------
m.violaceum2                TA-CCCGCTGAACTT-AAGCATATCAATAA-------------
m.violaceum3                TA-CCCGCTGAACTT-AAGCATATCAATAGCG-----------
m.stellariae                TA-CCCGATGAACTT-AAGCATATTAATAAG------------
m.dianthorum1               TA-CCCGCTGAACTT-AAGCATATCAATAAGCG----------
m.dianthorum2               TA-CCCGGA----------------------------------
m.violaceum1                -------------------------------------------
m.anomalum                  TA-CCCGCTGAACTT-AAGCAT---------------------
b.abstrusa                  -------------------------------------------
b.vuyckii                   -------------------------------------------
u.fluitans                  TA-CCCGCTGAACTTAA--------------------------
u.brefeldii                 -------------------------------------------
                                                                       
