>Campylobacter   jejuni 3
----AUGUCCGUGAUUAUACAGA-UGUGGAAACGCCUUGCUCCAUCCCGAACCAAGAAGC
UAAGCACAUCGUGG---GUGAUG-AUACUACGCCUUACUGGCAGG-GGGAAAGUA-GCUC
AUUGCGGACUU----
>Methanothermobacter   
------GUUGGCGGUCAUGGCGU-GGGGUUUAUACCUGAUCUCGUUUCGAUCUCAGUAGU
UAAGUCCUGCUGCGUUGUGGGUGUGUACUGCGGUUUUUUGC--UGUGGGAAGCCCACUUC
ACUGCCAGACAA---
>Candida   albicans 1
------GGUUGCGGCCAUAUCUA-GCAGAAAGCACCGUUCCCCGUUCGAUCAACCGUAGU
UAAGCUGCUAAGAGCAAUACCGA-GUAGUGUAGUGGGAGACCAUACGCGAAACUA-UUGU
GCUGCAAUCU-----
>Sulfolobus   
----GCCCACCCGGUCACAGUGA-GCGGGCAACACCCGGACUCAUUUCGAACCCGGAAGU
UAAGCC-GCUCACG-UUAGUGGG-GCCGUGGAUACCGUGAGGAUCCGCAGCCCCA-CUAA
GCUGGGAUGGGUUUU
>Dictyostelium   discoideum 1
------GUAUACGGCCAUACUAG-GUUGGAAACACAUCAUCCCGU-UCGAUCUGAUAAGU
AAAUCGACCUCAGG-CCUUCCAA-GUACUCUGGUUGGAGACAACAGGGGAACAUA-GGGU
GCUGUAUACU-----
>Nosema   bombycis 1
-------GAUACGGUUAUAUUUA-CUGAAAACCACCGGAACCCAU-CAGAACUCCGAAGU
UAAACCAGUAUGAG-CUUAAUUA-GUACUAAGAAGGGAGACCACUUGGGAACGUU-GGGU
GGUA-----------
>Zea   mays 1
------GGAUGCGAUCAUACCAG-CACUAAAGCACCGGAUCCCAU-CAGAACUCCGAAGU
UAAGCGUGCUUGGG-CGAGAGUA-GUACUAGGAUGGGUGACCUCCUGGGAAGUCC-UCGU
GUUGCAUUCC-----
>Cryptosporidium   parvum 1
------GCAAUCGGCCAUACUAC-AUCGAAUAUACCGGAUCCCAU-CAGAACUCCGAAGU
CAAGCGGUGUAAGG-UUCGGUUA-GUACUAGGGUGGGGGACCACCUGGGAAGACCAGAAU
GUCGAUCGCCUC---
>Euglena   
------GAGUACGGCCAUACUAC-CGGGAAUACACCUGAACCCGU-UCGAUUUCAGAAGU
UAAGCCGGGUUAGG-CCCAGUUA-GUACUG-AGUGGGCGACCACUUGGGAACACU-GGGU
GCUGUACGCUU----
>Caenorhabditis   elegans 1
------GCUUACGACCAUAUCAC-GUUGAAUGCACGCCAUCCCGU-CCGAUCUGGCAAGU
UAAGCAACGUUGAG-UCCAGUUA-GUACUUGGAUCGGAGACGGCCUGGGAAUCCU-GGAU
GUUGUAAGCU-----
>Drosophila   melanogaster 1
------GCCAACGACCAUACCAC-GCUGAAUACAUCGGUUCUCGU-CCGAUCACCGAAAU
UAAGCAGCGUCGGG-CGCGGUUA-GUACUUAGAUGGGGGACCGCUUGGGAACACC-GCGU
GUUGUUGGCCU----
>Homo
------GUCUACGGCCAUACCAC-CCUGAACGCGCCCGAUCUCGU-CUGAUCUCGGAAGC
UAAGCAGGGUCGGG-CCUGGUUA-GUACUUGGAUGGGAGACCGCCUGGGAAUACC-GGGU
GCUGUAGGCUUU---
>Methanospirillum   hungatei 1
----UCAAUAGCGGCCACAGCAG-GUGUGUCACACCCGUUCCCAUUCCGAACACGGAAGU
UAAGACACCUCACGUGGAUGACG-GUACUGAGGUACGCGAGUCCUCGGGAAAUCAUCCUC
GCUGCUAUUGUU---
>Flavobacterium   hydatis 1
------UAAGGUGGUUAUUGCGG-CGGGGCUCGACCUCUUCCCAUCCCGAACAGAGUAGU
UAAGCCCGCCUGCG---CAGAUG-GUACU-------GCAGUUAUGUGGGAGAGUA-UGUC
GUCGCCUUUC-----
>Bacillus   anthracis 1
------UUUGGUGAUGAUGGCAG-AGAGGUCACACCCGUUCCCAUACCGAACACGGAAGU
UAAGCUCUCUAGCG---CCGAUG-GUAGUUGGGACCUUGUCCCUGUGAGAGUA---GGAC
GUCGCCAAGC-----
>Thermotoga   maritima 1
--AUCCCCGGGUGCCGAUACUGGGGCGGGAAACACCCGGUUCCAUUCCGAACCCGGCCGU
UAAGCCGCCCUGGG---CCGAUG-GUAGUAUGG-GGGCAGCCCCAUGCGAGAGUA-GGUA
GCGCCCGGGGAU---
>Escherichia   
----UGCCUGGCGGCCGUAGCGC-GGUGGUCCCACCUGACCCCAUGCCGAACUCAGAAGU
GAAACGCCGUAGCG---CCGAUG-GUAGUGUGG--GGUCUCCCCAUGCGAGAGUA-GGGA
ACUGCCAGGCAU---
>Agrobacterium   tumefaciens 6
---CGACCUGGUGGUCAUCGCGG-GGCGGCUGCACCCGUUCCCUUUCCGAACACGGCCGU
GAAACGCCCCAGCG---CCAAUG-GUACUUCGUCUCAAGA---CGCGGGAGAGUA-GGUC
GCUGCCAGGUCU---
>Thermus   
--AAUCCCCCGUGCCCAUAGCGG-CGUGGAACCACCCGUUCCCAUUCCGAACACGGAAGU
GAAACGCGCCAGCG---CCGAUG-GUACUG-GGCGGGCGACCGCCUGGGAGAGUA-GGUC
GGUGCGGGGGAU---
>Thermoplasma   
------GGCAACGGUCAUAGCAG-CAGGGAAACACCAGAUCCCAUUCCGAACUCGACGGU
UAAGCCUGCU-GCGUAUUGCGUU-GUACUGUAUGCCGCGAGGGUACGGGAAGCGCAAUAU
GCUGUUACCACU---
>Halorubrum   distributum 1
------GUAGGCGGCCAAAGCGG-CAGGGAAAGACCCGUACCCAUUCCGAACACGGAAGU
GAAGCCUGCCAGCGUACCAGCUA-GUACUGGAGUGGGAGACCCUCUGGGAGCGCUGGUUC
GCCGCCUACUC----
>Pyrobaculum   aerophilum 1
-GCCCCUAACCCGGCCAUAGGCGCCGGUGAUACGCCCGGUCUCAU-CAGAACCCGGAAGC
UAAGGCCGGCGCCGCGCUCGGGA-GUACUGGGCUCCGCGAGGGCCCGGGAAACCG-GCGU
GCUGGGAGGGGGCUU
>Methanococcus   
---UGACAUAACGGUCAAAGCGG-AGGUGUAACAUCCGAUCCCAUCCCGAUCUCGGAAAU
UAAGCCCUCCAGCGAUUCUUUAA-GUACU-------GCUAUCUAGUGGGAACAAAGUGAC
GCCGUUAGUCAC---
>Nanoarchaeum   equitans 1
GUUUCGUGGGAGGGCCAUAGCGGCCCGGGAACCACCCGUACCCAUCUCGAACACGGAAGU
UAAGCCGGGCCGCGUCCCGAGUG-GUACU--GCCCCGCGAAGGGGUGGGAAGCUCGGGAU
GCCC-----------
>Thermococcus   
----GGUACGGCGGUCAUAGCGG-CGGGGUCACACCCGGUCUCGUUUCGACCCCGGAAGU
UAAGCCCGCCAGCGAUCCCGGUU-GUACUGCCCUCCGGGAGGGGGCGGGAACCGG-GGAC
GCCGCCGGCCAC---
