>Methanococcus
---UGACAUAACGGUCAAAGCGGAG-GUGUAACAUCCGAUCCCAUCCCGAUCUCGGAAAU
UAAGCCCUCCAGCGAUUCUUUAA-GUACUGCUAUCUA-------GUGGGAACAAAGUGAC
GCCGUUAGUCAC----
>Methanothermococcus
---UGAUAUAACGGUCAUAGCGGAG-GAGCCACAUCCGAUCCCGUCCCGAUCUCGGAAAU
UAAGCCCUCCAGCGAUACCCUAA-GUACUGCCAUUUG-------GUGGGAACAGGGUGAC
GCUGUUGAUCAC----
>Pyrococcus
----GGUACGGCGGUCAUAGCGGGG-GGGCCACACCCGGUCUCAUUUCGAACCCGGAAGU
UAAGCCCCCCAGCGAUCCCGGCU-GUACUGCCCUCCGAGAGGGGGCGGGAACCGGG-GAC
GCCGCCGGCCA-----
>Thermococcus
----GGUACGGCGGUCAUAGCGGCG-GGGUCACACCCGGUCUCGUUUCGACCCCGGAAGU
UAAGCCCGCCAGCGAUCCCGGUU-GUACUGCCCUCCGGGAGGGGGCGGGAACCGGG-GAC
GCCGCCGGCCAC----
>Methanothermobacter
-----GU-UGGCGGUCAUGGCGUGG-GGUUUAUACCUGAUCUCGUUUCGAUCUCAGUAGU
UAAGUCCUGCUGCGUUGUGGGUGUGUACUGCGGUUUUUU--GCUGUGGGAAGCCCACUUC
ACUGCCAGACAA----
>Methanothermus
----GGUACGGCGACCAUAGCGGGG-GGGCCACACCUGAACCCGUUCCGAUCUCAGAAGU
UAAGCCCCCCUGCGUUGGAGGUG-GUACUGCAACGUUA---GUUGCGGGAAGCCUCCAAC
GUCGCCGGCCCA----
>Campylobacter
----AUGUCCGUGAUUAUACAGAUG-UGGAAACGCCUUGCUCCAUCCCGAACCAAGAAGC
UAAGCACAUCGUGGGUGAUGAUA-CUACGCCUUACUGGC----AGGGGGAAAGUAG-CUC
AUUGCGGACUU-----
>Chlamydia
------CUUGGUGAUAAUAGAGAGA-GGGAAACACCUGACACCAUUCCGAACUCAGAAGU
UAAGCCUCUGAUCGCUGAUGGUA-CUAUACACAA--GAG----UAUGGGAGAGUAG-GUC
GUCGCCAAGCAU----
>Escherichia
----UGCCUGGCGGCCGUAGCGCGG-UGGUCCCACCUGACCCCAUGCCGAACUCAGAAGU
GAAACGCCGUAGCGCCGAUGGUA-GUG-UGGGGUCUCCC----CAUGCGAGAGUAG-GGA
ACUGCCAGGCAU----
>Agrobacterium
---CGACCUGGUGGUCAUCGCGGGG-CGGCUGCACCCGUUCCCUUUCCGAACACGGCCGU
GAAACGCCCCAGCGCCAAUGGUA-CU--UCGUCUCAAGA----CGCGGGAGAGUAG-GUC
GCUGCCAGGUCU----
>Thermus
--AAUCCCCCGUGCCCAUAGCGGCG-UGGAACCACCCGUUCCCAUUCCGAACACGGAAGU
GAAACGCGCCAGCGCCGAUGGUA-CUGGGCGGGCGACCG----CCUGGGAGAGUAG-GUC
GGUGCGGGGGAU----
>Geobacillus
------CCUAGUGGUGAUAGCGGAG-GGGAAACACCCGUUCCCAUCCCGAACACGGAAGU
UAAGCCCUCCAGCGCCGAUGGUA-GUUGGGGCCAGCGCC----CCUGCAAGAGUAG-GUC
GCUGCUAGGC------
>Bacillus
------UUUGGUGAUGAUGGCAGAG-AGGUCACACCCGUUCCCAUACCGAACACGGAAGU
UAAGCUCUCUAGCGCCGAUGGUA-GUUGGGACCU-UGUC----CCUGUGAGAGUAG-GAC
GUCGCCAAGC------
>Spirochaeta
------CCUGGUGAUCAUAGCGAAG-AGGUCCCACCCGUUCCCAUCCCGAACACGGAAGU
UAAGCUCUUCAGCGCCGAUGGUA-CU----GCUAUUGC--------GGGAGAGUAG-GUC
GUCGCCAGGCU-----
>Aquifex
----CCCCUGGUGGCCAUAGCGGGG-GGGAAACACCCGGUCCCAUUCCGAACCCGGCAGU
UAAGCCCCCCAGCGCCGAUGAUA-CUGUGCCGGCAGCGG----CACGGGAAAGUAG-GUC
GCUGCCAGGGG-----
>Thermotoga
--AUCCCCGGGUGCCGAUACUGGGGCGGGAAACACCCGGUUCCAUUCCGAACCCGGCCGU
UAAGCCGCCCUGGGCCGAUGGUA-GUAUGGGGGCAGCCC----CAUGCGAGAGUAG-GUA
GCGCCCGGGGAU----
>Streptomyces
----GUUUCGGUGGUCAUAGCGUUA-GGGAAACGCCCGGUUACAUUCCGAACCCGGAAGC
UAAGCCUUACAGCGCCGAUGGUA-CUGCAGGGGGGACCC----UGUGGGAGAGUAG-GAC
GCCGCCGAACA-----
>Flavobacterium
------UAAGGUGGUUAUUGCGGCG-GGGCUCGACCUCUUCCCAUCCCGAACAGAGUAGU
UAAGCCCGCCUGCGCAGAUGGUA-CUGCAGUUAU----------GUGGGAGAGUAU-GUC
GUCGCCUUUC------
>Natrinema
-----UUACGGCGGCCACAGCGGCGAGGUA-CCUCCCGUACCCAUCCCGAACACGGAAGA
UAAGCUCGCCUGCGUUUCGGUC-AGUACUGGAGUGGGCGACCCUCUGGGAACCCCGAUUC
GCCGCCACCACUC---
>Haloferax
-----UUAAGGCGGCCAGAGCGGUGAGGUU-CCACCCGUACCCAUCCCGAACACGGAAGU
UAAGCUCACCUGCGUUCUGGUC-AGUACUGGAGUGAGCGAUCCUCUGGGAAAUCCAGUUC
GCCGCCCCU-------
>Halobacterium
-----UUAAGGCGGCCAUAGCGGUGGGGUU-ACUCCCGUACCCAUCCCGAACACGGAAGA
UAAGCCCGCCUGCGUUCCGGUC-AGUACUGGAGUG--CGAGCCUCUGGGAAAUCCGGUUC
GCCGCCUACU------
>Haloarcula
------UUAGGCGGCCACAGCGGUGGGGUUGCCUCCCGUACCCAUCCCGAACACGGAAGA
UAAGCCCACCAGCGUUCCGGGG-AGUACUGGAGUGCGCGAGCCUCUGGGAAACGCGGUUC
GCCGCCACC-------
>Halorubrum
------GUAGGCGGCCAAAGCGGCAGGGAA-AGACCCGUACCCAUUCCGAACACGGAAGU
GAAGCCUGCCAGCGUACCAGCU-AGUACUGGAGUGGGAGACCCUCUGGGAGCGCUGGUUC
GCCGCCUACUC-----
>Methanosarcina
--GGAGUUUGGC-GCCAUAGCGGCAG-UGUAACUCCUGUACCCAUCCCGAACACAGUAGA
UAAGCCUGCCCGCGUUCCUUAC-UGUACUGAAGUGUGCGAGCCUUCGGGAACUCUGGAUC
GCUGCCAUACUCACC-
>Methanosarcina.v
----GAUCUGGCAGCCAUAGCGGCAGGUGUAA-UCCUGUACCCAUCCCGAACACAGUAGA
UAAGCCUGCCCGCGUUCCUUGCCUGUACUGAAGUGUGCGAGC-UUCGGGAACUCUGGAUC
G-UGCCAUAUCAGU--
>Methanolobus
------GGUGGCGGCCAUAGCGGCGG-GGCAAUUCCUGUACCCAUCCCGAACACAGAAGA
UAAGCCCGCCUGCGUUCUAUAC-UGUACUAAAGUAUGAGAGUCUUUGGGAAAUAUGGAAC
GCUGCC--ACCAAC--
>Thermoplasma
------GGCAACGGUCAUAGCAGCA-GGGAAACACCAGAUCCCAUUCCGAACUCGACGGU
UAAGCCU-GCUGCGUAUUGCGUU-GUACUGUAUGCCGCGAGGGUACGGGAAGCGCAAUAU
GCUGUUACCACU----
>Archeoglobus
----AUGCCGACGGUCAUAGGACGG-GGGAAACACCCGGACUCAUUCCGAACCCGGAAGU
UAAGCCCCGUUCCGUCCCGCACA-GUACUGUGUUCCGAGAGGGCACGGGAACUGCGGGA-
ACCGUCGGCUU-----
>Nanoarchaeum
GUUUCGUGGGAGGGCCAUAGCGGCCCGGGAACCACCCGUACCCAUCUCGAACACGGAAGU
UAAGCCGGGCCGCGUCCCGAGUG-GUACUG--CCCCGCGAAGGGGUGGGAAGCUCGGGAU
GCCC------------
>Methanospirillum
----UCAAUAGCGGCCACAGCAGGU-GUGUCACACCCGUUCCCAUUCCGAACACGGAAGU
UAAGACACCUCACGUGGAUGACG-GUACUGAGGUACGCGAGUCCUCGGGAAAUCAUCCUC
GCUGCUAUUGUU----
>Saccharomyces
------GGUUGCGGCCAUAUCUACCAGA-AAGCACCGUUCUCCGUCCGAUCAACUGUAGU
UAAG-CUGGUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGG-U
GCUGCAAUCU------
>Candida
------GGUUGCGGCCAUAUCUAGCAGA-AAGCACCGUUCCCCGUUCGAUCAACCGUAGU
UAAG-CUGCUAAGAGCAAUACCGAGUAGUGUAGUGGGAGACCAUACGCGAAACUAUUG-U
GCUGCAAUCU------
>Amoebidium
------GGUUACGGCCAUACCUAGCAGA-AAGCACCCCAUCUCGUCCGAUCUGG-GAAGU
UAAA-CUGCUAUGGGCGUGGUU-AGUACUGCGGUGGGGGACCACGCGGGAAUACCACG-U
GCUGUAAUCU------
>Dictyostelium
------GUAUACGGCCAUACUAGGUUGG-AAACACAUCAUCCCGUUCGAUCUGA-UAAGU
AAAU-CGACCUCAGGCCUU-CCAAGUACUCUGGUUGGAGACAACAGGGGAACAUAGGG-U
GCUGUAUACU------
>Physarum
------GGAUGCGGCCAUACUAAGGAGA-AAGCACCUCAUCCCGUCCGAUCUGA-GAAGU
UAAG-CUCCUUCAGGCGUG-GUUAGUACUGGGGUGGGGGACCACCUGGGAAUCCCACG-U
GCUGCAUUCUU-----
>Euglena
------GAGUACGGCCAUACUACCGGGA-AUACACCUGAACCCGUUCGAUUUCA-GAAGU
UAAG-CCGGGUUAGGCCCAGUU-AGUACUG-AGUGGGCGACCACUUGGGAACACUGGG-U
GCUGUACGCUU-----
>Nosema
-------GAUACGGUUAUAUUUACUGAA-AACCACCGGAACCCAUCAGAACUCC-GAAGU
UAAA-CCAGUAUGAGCUUAAUU-AGUACUAAGAAGGGAGACCACUUGGGAA--CGUUG-G
GUGGUA----------
>Zea
------GGAUGCGAUCAUACCAGCACUA-AAGCACCGGAUCCCAUCAGAACUCC-GAAGU
UAAG-CGUGCUUGGGCGAGAGU-AGUACUAGGAUGGGUGACCUCCUGGGAAGUCCUCG-U
GUUGCAUUCC------
>Xenopus
------GCCUACGGCCAUACCACCCUGA-AAGUGCCCGAUAUCGUCUGAUCUCG-GAAGC
CAAG-CAGGGUCGGGCCUGGUU-AGUACUUGGAUGGGAGACCGCCUGGGAAUACCAGG-U
GUCGUAGGCUU-----
>Homo
------GUCUACGGCCAUACCACCCUGA-ACGCGCCCGAUCUCGUCUGAUCUCG-GAAGC
UAAG-CAGGGUCGGGCCUGGUU-AGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGG-U
GCUGUAGGCUUU----
>Cryptobranchus
------GCCUACGGCCAUACCACCCUGA-AUGCGCCCGAUCUCGUCUGAACUCA-GAAGC
UAAG-CAGGCUUGGGCCUGGUU-AGUACUUGGAUGGGAGACUGCCUGGGAAUACCAGG-U
GCUGUAGGCUUU----
>Caenorhabditis
------GCUUACGACCAUAUCACGUUGA-AUGCACGCCAUCCCGUCCGAUCUGG-CAAGU
UAAG-CAACGUUGAGUCCAGUU-AGUACUUGGAUCGGAGACGGCCUGGGAAUCCUGGA-U
GUUGUAAGCU------
>Drosophila
------GCCAACGACCAUACCACGCUGA-AUACAUCGGUUCUCGUCCGAUCACC-GAAAU
UAAG-CAGCGUCGGGCGCGGUU-AGUACUUAGAUGGGGGACCGCUUGGGAACACCGCG-U
GUUGUUGGCCU-----
>Cryptosporidium
------GCAAUCGGCCAUACUACAUCGA-AUAUACCGGAUCCCAUCAGAACUCC-GAAGU
CAAG-CGGUGUAAGGUUCGGUU-AGUACUAGGGUGGGGGACCACCUGGGAAGACCAGAAU
GUCGAUCGCCUC----
>Gelidium
------ACAUUCGGCCAUACUAAGUCGACAUGUACCCGAUCCCAUCCCGAACUCGGAAGU
CAAG-UCGCUUCAGGCCGGGUU-AGUACUGAGGUGAGGGAUCACUCGGGAAUCCCCGG-U
GCCGAAUGU-------
>Desulfurococcus
--UGCCCGACCCGGCCAUAGUGGCCGGGCA-ACACCCGGUCUCGUUUCGAACCCGGAAGU
UAAG-CCGGC--CACGUCAGAACGGCCGUGAGGUCCGAGAGGCCUCGCAGCCGUUCUG-A
GCUGGGAUCGGGCACC
>Sulfolobus
---GCCC-ACCCGGUCACAGUGAGCGGGCA-ACACCCGGACUCAUUUCGAACCCGGAAGU
UAAG-CCGCU--CACGUUAGUGGGGCCGUGGAUACCGUGAGGAUCCGCAGCCCCACUA-A
GCUGGGAUGGGUUUU-
>Pyrobaculum
-GCCCCUAACCCGGCCAUAGGCGCCGGUGAUACGCCCGGUCUCAUCA-GAACCCGGAAGC
UAAGGCCGGCGCCGCGCUCG-GGAGUACUGGGCUCCGCGAGGGCCCGGGAAACCGGCG-U
GCUGGGAGGGGGCUU-
