>Methanospirillum   hungatei 1
------UC-----AAU-----AGC--GGCCACAG-CAGGU--GUG-UCA-CACCCGUUCCCAUUCCGAACAC-GGAAGUUAAGACACCUCACGUGG--AUGA-C-G-GUACU----GA------GGUACGCGAGUCC-----U--C--GGGA-----AAUCAUCC-U-CGCUG----CU---AU-U-GUU-------
>Haloarcula   
-------------UUA-----GGC--GGCCACAG-CGGUG--GGG-UUGCCUCCCGUACCCAUCCCGAACAC-GGAAGAUAAGCCCACCAGCGUUC--CGGG-G-A-GUACU----GG------AGUGCGCGAGCCU-----C--U--GGGA-----AACGCGGU-U-CGCCG----CC---A-----CC-------
>Halobacterium   
----U--------UAA-----GGC--GGCCAUAG-CGGUG--GGG-UUA-CUCCCGUACCCAUCCCGAACAC-GGAAGAUAAGCCCGCCUGCGUUC--CGGU-C-A-GUACU----GG------AGUG--CGAGCCU-----C--U--GGGA-----AAUCCGGU-U-CGCCG----CCU--A-----CU-------
>Haloferax   
----U--------UAA-----GGC--GGCCAGAG-CGGUG--AGG-UUC-CACCCGUACCCAUCCCGAACAC-GGAAGUUAAGCUCACCUGCGUUC--UGGU-C-A-GUACU----GG------AGUGAGCGAUCCU-----C--U--GGGA-----AAUCCAGU-U-CGCCG----CC---C-----CU-------
>Halorubrum   distributum 1
-------------GUA-----GGC--GGCCAAAG-CGGCA--GGG-AAA-GACCCGUACCCAUUCCGAACAC-GGAAGUGAAGCCUGCCAGCGUAC--CAGC-U-A-GUACU----GG------AGUGGGAGACCCU-----C--U--GGGA-----GCGCUGGU-U-CGCCG----CC----------U--ACUC-
>Natrinema   sp. 1
-------------UUA----CGGC--GGCCACAG-CGGCG--AGG-UAC-CUCCCGUACCCAUCCCGAACAC-GGAAGAUAAGCUCGCCUGCGUUU--CGGU-C-A-GUACU----GG------AGUGGGCGACCCU-----C--U--GGGA-----ACCCCGAU-U-CGCCG----CC---A-----CC--ACUC-
>Methanolobus   tindarius 1
------GG-----U-------GGC--GGCCAUAG-CGGCG--GGG-CAA-UUCCUGUACCCAUCCCGAACAC-AGAAGAUAAGCCCGCCUGCGUUC--UAUA-C-U-GUACU----AA------AGUAUGAGAGUCU-----U--U--GGGA-----AAUAUGGA-A-CGCUG----CC---AC-C-AAC-------
>Methanosarcina   
------GG---AGUUU-----GGC---GCCAUAG-CGGCA--GUG-UAA-CUCCUGUACCCAUCCCGAACAC-AGUAGAUAAGCCUGCCCGCGUUC--CUUA-C-U-GUACU----GA------AGUGUGCGAGCCU-----U--C--GGGA-----ACUCUGGA-U-CGCUG----CC-AUACUC-ACC-------
>Methanosarcina.v   
------GA-----UCU-----GGC--AGCCAUAG-CGGCA--GGU-GUA-AUCCUGUACCCAUCCCGAACAC-AGUAGAUAAGCCUGCCCGCGUUC--CUUGCC-U-GUACU----GA------AGUGUGCGAGCUU--------C--GGGA-----ACUCUGGA-U-CG-UG----CC-AUAU-C-AGU-------
>Nanoarchaeum   equitans 1
------GU-----UUCGUGG-GAG--GGCCAUAG-CGGCC-CGGG-AAC-CACCCGUACCCAUCUCGAACAC-GGAAGUUAAGCCGGGCCGCGUCC--CGAG-U-G-GUACU----GC------C--CCGCGAAGGG-----G--U--GGGA-----AGCUCGGG-A-UGCC-----------------C-------
>Thermoplasma   
------GG-----CA-------AC--GGUCAUAG-CAGCA--GGG-AAA-CACCAGAUCCCAUUCCGAACUC-GACGGUUAAGCCUGC-UGCGUAU--UGCG-U-U-GUACU----GU------AUGCCGCGAGGGU-----A--C--GGGA-----AGCGCAAU-A-UGCUG----UU---AC-C-ACU-------
>Methanococcus   
-----UGA-----CAU-----AAC--GGUCAAAG-CGGAG--GUG-UAA-CAUCCGAUCCCAUCCCGAUCUC-GGAAAUUAAGCCCUCCAGCGAUU--CUUU-A-A-GUACU----GC------UAUC-------UA-----G--U--GGGA-----ACAAAGUG-A-CGCCG----UU---AG-U-CAC-------
>Methanothermococcus   
-----UGA-----UAU-----AAC--GGUCAUAG-CGGAG--GAG-CCA-CAUCCGAUCCCGUCCCGAUCUC-GGAAAUUAAGCCCUCCAGCGAUA--CCCU-A-A-GUACU----GC------CAUU-------UG-----G--U--GGGA-----ACAGGGUG-A-CGCUG----UU---GA-U-CAC-------
>Methanothermobacter   
------G-------UU-----GGC--GGUCAUGG-CGUGG--GGU-UUA-UACCUGAUCUCGUUUCGAUCUC-AGUAGUUAAGUCCUGCUGCGUUG--UGGG-U-GUGUACU----GC------GGUU-------UUUUGCUG--U--GGGA-----AGCCCACU-U-CACUG----CC---AG-A-CAA-------
>Methanothermus   
------GG-----UAC-----GGC--GACCAUAG-CGGGG--GGG-CCA-CACCUGAACCCGUUCCGAUCUC-AGAAGUUAAGCCCCCCUGCGUUG--GAGG-U-G-GUACU----GC-------AAC-------GUUAGUUG--C--GGGA-----AGCCUCCA-A-CGUCG----CC---GG-C-CCA-------
>Pyrococcus   
------GG-----UAC-----GGC--GGUCAUAG-CGGGG--GGG-CCA-CACCCGGUCUCAUUUCGAACCC-GGAAGUUAAGCCCCCCAGCGAUC--CCGG-C-U-GUACU----GC------CCUCCGAGAGGGG-----G--C--GGGA------ACCGGGG-A-CGCCG----CC---GG-C-CA--------
>Thermococcus   
------GG-----UAC-----GGC--GGUCAUAG-CGGCG--GGG-UCA-CACCCGGUCUCGUUUCGACCCC-GGAAGUUAAGCCCGCCAGCGAUC--CCGG-U-U-GUACU----GC------CCUCCGGGAGGGG-----G--C--GGGA------ACCGGGG-A-CGCCG----CC---GG-C-CAC-------
>Streptomyces   ambofaciens 1
------GU-----UUC-----GGU--GGUCAUAG-CGUUA--GGG-AAA-CGCCCGGUUACAUUCCGAACCC-GGAAGCUAAGCCUUACAGCGC-----CGA-U-G-GUACU----GCAGGGGGGACC-------CU-----G--U--GGGAGAGUA------GG-A-CGCCG----CC---GA-A-CA--------
>Agrobacterium   tumefaciens 6
------CGA----CCU-----GGU--GGUCAUCG-CGGGG--CGG-CUG-CACCCGUUCCCUUUCCGAACAC-GGCCGUGAAACGCCCCAGCGC-----CAA-U-G-GUACU----UCGUC--UCAAG-------AC-----G--C--GGGAGAGUA------GG-U-CGCUG----CC---AG-G-UCU-------
>Escherichia   
------UG-----CCU-----GGC--GGCCGUAG-CGCGG--UGG-UCC-CACCUGACCCCAUGCCGAACUC-AGAAGUGAAACGCCGUAGCGC-----CGA-U-G-GUAGU----GUG-GGGUCUCC-------CC-----A--U--GCGAGAGUA------GG-G-AACUG----CC---AG-G-CAU-------
>Thermus   
AA----UC-----CCC-----CGU--GCCCAUAG-CGGCG--UGG-AAC-CACCCGUUCCCAUUCCGAACAC-GGAAGUGAAACGCGCCAGCGC-----CGA-U-G-GUACU----GGGCGGGCGACC-------GC-----C--U--GGGAGAGUA------GG-U-CGGUG----CG---GG-G-GAU-------
>Aquifex   aeolicus 1
------CC-----CCU-----GGU--GGCCAUAG-CGGGG--GGG-AAA-CACCCGGUCCCAUUCCGAACCC-GGCAGUUAAGCCCCCCAGCGC-----CGA-U-G-AUACU----GUGCCGGCAGCG-------GC-----A--C--GGGAAAGUA------GG-U-CGCUG----CC---AG-G-GG--------
>Thermotoga   maritima 1
--AU--CC-----CCG-----GGU--GCCGAUAC-UGGGGC-GGG-AAA-CACCCGGUUCCAUUCCGAACCC-GGCCGUUAAGCCGCCCUGGGC-----CGA-U-G-GUAGU----AUGGGGGCAGCC-------CC-----A--U--GCGAGAGUA------GG-U-AGCGC----CC---GG-G-GAU-------
>Campylobacter   jejuni 3
------AU-----GUC-----CGU--GAUUAUAC-AGAUG--UGG-AAA-CGCCUUGCUCCAUCCCGAACCA-AGAAGCUAAGCACAUCGUGGG-----UGA-U-G-AUACU----ACGCC--UUACU-------GG-----C--AGGGGGAAAGUA------GC-U-CAUUG----C----GG-A-CUU-------
>Chlamydia   trachomatis 1
-------------CUU-----GGU--GAUAAUAG-AGAGA--GGG-AAA-CACCUGACACCAUUCCGAACUC-AGAAGUUAAGCCUCUGAUCGC-----UGA-U-G-GUACU----AUACA--CAAGA-------GU-----A--U--GGGAGAGUA------GG-U-CGUCG----CC---AA-G-CAU-------
>Bacillus   anthracis 1
------UU-------U-----GGU--GAUGAUGG-CAGAG--AGG-UCA-CACCCGUUCCCAUACCGAACAC-GGAAGUUAAGCUCUCUAGCGC-----CGA-U-G-GUAGUU-GGGA------CCUU-------GU-----CCCU--GUGAGAGUA------GG-A-CGUCG----CC---AA-G-C---------
>Geobacillus   stearothermophilus 1
------CC-------U-----AGU--GGUGAUAG-CGGAG--GGG-AAA-CACCCGUUCCCAUCCCGAACAC-GGAAGUUAAGCCCUCCAGCGC-----CGA-U-G-GUAGUUGGGGC------CAGC-------GC-----CCCU--GCAAGAGUA------GG-U-CGCUG----CU---AG-G-C---------
>Flavobacterium   hydatis 1
------UA-------A-----GGU--GGUUAUUG-CGGCG--GGG-CUC-GACCUCUUCCCAUCCCGAACAG-AGUAGUUAAGCCCGCCUGCGC-----AGA-U-G-GUACU----GC------AGUU-------AU-----G--U--GGGAGAGUA------UG-U-CGUCG----CC---UU-U-C---------
>Spirochaeta   aurantia 1
------CC-------U-----GGU--GAUCAUAG-CGAAG--AGG-UCC-CACCCGUUCCCAUCCCGAACAC-GGAAGUUAAGCUCUUCAGCGC-----CGA-U-G-GUACU----GC------UAUU-------GC-----------GGGAGAGUA------GG-U-CGUCG----CC---AG-GCU---------
>Archeoglobus   
------AU-----GCC-----GAC--GGUCAUAG-GACGG--GGG-AAA-CACCCGGACUCAUUCCGAACCC-GGAAGUUAAGCCCCGUUCCGUCC--CGCA-C-A-GUACU----GU------GUUCCGAGAGGGC-----A--C--GGGA------ACUGCGG-G-AACCG----UC---GG-C-UU--------
>Pyrobaculum   aerophilum 1
------G--CC--CCU-----AACCCGGCCAUAGGCGCCG--GUG-AUA-CGCCCGGUCUCAUCA-GAACCC-GGAAGCUAAGGCCGGCGCCGCGC--UCGG-G-A-GUACU----GG------GCUCCGCGAGGGC-----C--C--GGGA------AACCGGC-G-UGCUGGGAGGG---GG-C-UU--------
>Desulfurococcus   mobilis 1
------UG-----CCC-----GACCCGGCCAUAG-UGGCC--GGG-CAA-CACCCGGUCUCGUUUCGAACCC-GGAAGUUAAGCCGGCCA-CGUCAGAACGG-C-C-GU-------GA------GGUCCGAGAGGCC-----U--C---GCA------GCCGUUC-UGAGCUGGGAUCG---GG-C-AC--C-----
>Sulfolobus   
------GC-----C-------CACCCGGUCACAG-UGAGC--GGG-CAA-CACCCGGACUCAUUUCGAACCC-GGAAGUUAAGCCGCUCA-CGUUAGUGGGG-C-C-GU-------GG------AUACCGUGAGGAU-----C--C---GCA------GCCCCAC-UAAGCUGGGAUGG---GU-U-UU--------
>Gelidium   amansii 1
-------------ACA-----UUC--GGCCAUAC-UAAGU--CGACAUG-UACCCGAUCCCAUCCCGAACUC-GGAAGUCAAGUCGCUUCAGGC-C--GGGU-U-A-GUACU----GA------GGUGAGGGAUCAC-----U--C--GGGA-----AUCCCCGG-U--GCCG----AA----------U--G--U-
>Cryptosporidium   parvum 1
-------------GCA-----AUC--GGCCAUAC-UACAU--CGA-AUA-UACCGGAUCCCAUCA-GAACUC-CGAAGUCAAGCGGUGUAAGGU-U--CGGU-U-A-GUACU----AG------GGUGGGGGACCAC-----C--U--GGGA-----AGACCAGAAU--GUCG----AU----------CG-CCUC-
>Nosema   bombycis 1
-------------G-A-----UAC--GGUUAUAU-UUACU--GAA-AAC-CACCGGAACCCAUCA-GAACUC-CGAAGUUAAACCAGUAUGAGC-U--UAAU-U-A-GUACU----AA------GAAGGGAGACCAC-----U--U--GGGA-----ACGUUGGG-U--GGU-----------------------A-
>Zea   mays 1
-------------GGA-----UGC--GAUCAUAC-CAGCA--CUA-AAG-CACCGGAUCCCAUCA-GAACUC-CGAAGUUAAGCGUGCUUGGGC-G--AGAG-U-A-GUACU----AG------GAUGGGUGACCUC-----C--U--GGGA-----AGUCCUCG-U--GUUG----CA----------U--UC-C-
>Euglena   
-------------GAG-----UAC--GGCCAUAC-UACCG--GGA-AUA-CACCUGAACCCGUUC-GAUUUC-AGAAGUUAAGCCGGGUUAGGC-C--CAGU-U-A-GUACU----GA-------GUGGGCGACCAC-----U--U--GGGA-----ACACUGGG-U--GCUG----UA----------C--GCUU-
>Caenorhabditis   elegans 1
-------------GCU-----UAC--GACCAUAU-CACGU--UGA-AUG-CACGCCAUCCCGUCC-GAUCUG-GCAAGUUAAGCAACGUUGAGU-C--CAGU-U-A-GUACU----UG------GAUCGGAGACGGC-----C--U--GGGA-----AUCCUGGA-U--GUUG----UA----------A--GCU--
>Drosophila   melanogaster 1
-------------GCC-----AAC--GACCAUAC-CACGC--UGA-AUA-CAUCGGUUCUCGUCC-GAUCAC-CGAAAUUAAGCAGCGUCGGGC-G--CGGU-U-A-GUACU----UA------GAUGGGGGACCGC-----U--U--GGGA-----ACACCGCG-U--GUUG----UU----------G--GCCU-
>Xenopus   laevis 1
-------------GCC-----UAC--GGCCAUAC-CACCC--UGA-AAG-UGCCCGAUAUCGUCU-GAUCUC-GGAAGCCAAGCAGGGUCGGGC-C--UGGU-U-A-GUACU----UG------GAUGGGAGACCGC-----C--U--GGGA-----AUACCAGG-U--GUCG----UA----------G--GCUU-
>Cryptobranchus   alleganiensis 1
-------------GCC-----UAC--GGCCAUAC-CACCC--UGA-AUG-CGCCCGAUCUCGUCU-GAACUC-AGAAGCUAAGCAGGCUUGGGC-C--UGGU-U-A-GUACU----UG------GAUGGGAGACUGC-----C--U--GGGA-----AUACCAGG-U--GCUG----UA----------G--GCUUU
>Homo   
-------------GUC-----UAC--GGCCAUAC-CACCC--UGA-ACG-CGCCCGAUCUCGUCU-GAUCUC-GGAAGCUAAGCAGGGUCGGGC-C--UGGU-U-A-GUACU----UG------GAUGGGAGACCGC-----C--U--GGGA-----AUACCGGG-U--GCUG----UA----------G--GCUUU
>Dictyostelium   discoideum 1
-------------GUA-----UAC--GGCCAUAC-UAGGU--UGG-AAA-CACAUCAUCCCGUUC-GAUCUG-AUAAGUAAAUCGACCUCAGGC-C--UUCC-A-A-GUACU----CU------GGUUGGAGACAAC-----A--G--GGGA-----ACAUAGGG-U--GCUG----UA----------U--ACU--
>Physarum   polycephalum 1
-------------GGA-----UGC--GGCCAUAC-UAAGG--AGA-AAG-CACCUCAUCCCGUCC-GAUCUG-AGAAGUUAAGCUCCUUCAGGC-G--UGGU-U-A-GUACU----GG------GGUGGGGGACCAC-----C--U--GGGA-----AUCCCACG-U--GCUG----CA----------U--UCUU-
>Amoebidium   parasiticum 1
-------------GGU-----UAC--GGCCAUAC-CUAGC--AGA-AAG-CACCCCAUCUCGUCC-GAUCUG-GGAAGUUAAACUGCUAUGGGC-G--UGGU-U-A-GUACU----GC------GGUGGGGGACCAC-----G--C--GGGA-----AUACCACG-U--GCUG----UA----------A--UCU--
>Candida   albicans 1
-------------GGU-----UGC--GGCCAUAU-CUAGC--AGA-AAG-CACCGUUCCCCGUUC-GAUCAACCGUAGUUAAGCUGCUAAGAGC-A--AUAC-CGA-GUAGU----GU------AGUGGGAGACCAU-----A--C--GCGA-----AACUAUUG-U--GCUG----CA----------A--UCU--
>Saccharomyces   
-------------GGU-----UGC--GGCCAUAU-CUACC--AGA-AAG-CACCGUUCUCCGUCC-GAUCAACUGUAGUUAAGCUGGUAAGAGC-C--UGAC-CGA-GUAGU----GU------AGUGGGUGACCAU-----A--C--GCGA-----AACUCAGG-U--GCUG----CA----------A--UCU--

