>Bacillus   anthracis 1
-UU-------U------------GG--UGAUGAUGG-CAGA-GAG-GUCACACCCGUUCCCAUACCGAACA-CGGAAGUUAAGCUCUCUAGCGC----CGAU--G-GUAGUUGG-GAC-------CUUGUCCCUGUGAGAGUAG------GACGUC-GCCAA---GC----
>Flavobacterium   hydatis 1
-UA-------A------------GG--UGGUUAUUG-CGGC-GGG-GCUCGACCUCUUCCCAUCCCGAACA-GAGUAGUUAAGCCCGCCUGCGC----AGAU--G-GUACUGCA-GU------------UAUGUGGGAGAGUAU------GUCGUC-GCCUU---UC----
>Campylobacter   jejuni 3
-AU-----GUC------------CG--UGAUUAUAC-AGAU-GUG-GAAACGCCUUGCUCCAUCCCGAACC-AAGAAGCUAAGCACAUCGUGGG----UGAU--G-AUACUACGCCUU-------ACUGGCAGGGGGAAAGUAG------CUCAUU-GC-GG---ACUU--
>Agrobacterium   tumefaciens 6
-CG-------A-CCU--------GG--UGGUCAUCG-CGGG-GCG-GCUGCACCCGUUCCCUUUCCGAACA-CGGCCGUGAAACGCCCCAGCGC----CAAU--G-GUACUUC--GUC-------UCAAGACGCGGGAGAGUAG------GUCGCU-GCCAG---GUCU--
>Escherichia   
-UG---------CCU--------GG--CGGCCGUAG-CGCG-GUG-GUCCCACCUGACCCCAUGCCGAACU-CAGAAGUGAAACGCCGUAGCGC----CGAU--G-GUAGUGUG-GGG-------UCUCCCCAUGCGAGAGUAG------GGAACU-GCCAG---GCAU--
>Thermotoga   maritima 1
-AU-------CCCCG--------GG--UGCCGAUAC-UGGG-GCGGGAAACACCCGGUUCCAUUCCGAACC-CGGCCGUUAAGCCGCCCUGGGC----CGAU--G-GUAGUAUGGGGG-------CAGCCCCAUGCGAGAGUAG------GUAGCG-CCCGG---GGAU--
>Thermus   
-AA-------UCCCC--------CG--UGCCCAUAG-CGGC-GUG-GAACCACCCGUUCCCAUUCCGAACA-CGGAAGUGAAACGCGCCAGCGC----CGAU--G-GUACUGGGCGGG-------CGACCGCCUGGGAGAGUAG------GUCGGU-GCGGG---GGAU--
>Methanothermobacter   
-GU-------U------------GG--CGGUCAUGG-CGUG-GGG-UUUAUACCUGAUCUCGUUUCGAUCU-CAGUAGUUAAGUCCUGCUGCGUUG-UGGGU--GUGUACUGCG-GUU-------UUUUGCUGUGGGA----AGCCC-ACUUCACU-GCCAG---ACAA--
>Methanospirillum   hungatei 1
-UCAA-----U------------AG--CGGCCACAG-CAGG-UGU-GUCACACCCGUUCCCAUUCCGAACA-CGGAAGUUAAGACACCUCACGUGG-AUGAC--G-GUACUGAG-GUACGCGAGU-----CCUCGGGA----AAUCA-UCCUCGCU-GCUAU---UGUU--
>Nanoarchaeum   equitans 1
-GU-------U----UCGUGG--GA--GGGCCAUAG-CGGCCCGG-GAACCACCCGUACCCAUCUCGAACA-CGGAAGUUAAGCCGGGCCGCGUCC-CGAGU--G-GUACUGC---CCCGCGAAG-----GGGUGGGA----AGCUC-GGGAUGCC------------C--
>Thermoplasma   
-GG-------C------------AA--CGGUCAUAG-CAGC-AGG-GAAACACCAGAUCCCAUUCCGAACU-CGACGGUUAAGCCUG-CUGCGUAU-UGCGU--U-GUACUGUA-UGCCGCGAGG-----GUACGGGA----AGCGC-AAUAUGCU-GUUAC---CACU--
>Methanococcus   
UGA-------C----------AUAA--CGGUCAAAG-CGGA-GGU-GUAACAUCCGAUCCCAUCCCGAUCU-CGGAAAUUAAGCCCUCCAGCGAUU-CUUUA--A-GUACUGCU-AUC------------UAGUGGGA----ACAAA-GUGACGCC-GUUAG---UCAC--
>Thermococcus   
-GG-------U----------ACGG--CGGUCAUAG-CGGC-GGG-GUCACACCCGGUCUCGUUUCGACCC-CGGAAGUUAAGCCCGCCAGCGAUC-CCGGU--U-GUACUGCC-CUCCGGGAGG-----GGGCGGGA----ACC-G-GGGACGCC-GCCGG---CCAC--
>Pyrobaculum   aerophilum 1
-GC--CCC--U------------AACCCGGCCAUAGGCGCC-GGU-GAUACGCCCGGUCUCAUCA-GAACC-CGGAAGCUAAGGCCGGCGCCGCGC-UCGGG--A-GUACUGGG-CUCCGCGAGG-----GCCCGGGA----AAC-C-GGCGUGCU-GGGAGGGGGCUU--
>Sulfolobus   
-GC-------C------------CACCCGGUCACAG-UGAG-CGG-GCAACACCCGGACUCAUUUCGAACC-CGGAAGUUAAGCCGCUCA-CGUUA-GUGGGGCC-G---UGGA-UACCGUGAGG-----AUCCGC-A----GCCCC-ACUAAGCU-GGGAUGGGUUUU--
>Halorubrum   distributum 1
-GU-------A------------GG--CGGCCAAAG-CGGC-AGG-GAAAGACCCGUACCCAUUCCGAACA-CGGAAGUGAAGCCUGCCAGCGUAC-CAGCU--A-GUACUGGA-GUGGGAGACC-----CUCUGGGA----GCGCU-GGUUCGCC-GCC-U---ACUC--
>Candida   albicans 1
-GG-------U------------UG--CGGCCAUAU-CUAG-CAG-AAAGCACCGUUCCCCGUUC-GAUCAACCGUAGUUAAGCUGCUAAGAGCAAU-ACCG--A-GUAGUGUA-GUGGGAGACC-----AUACGCGA----AACUA-UUGU-GCU-GCA-A---UC-U--
>Drosophila   melanogaster 1
-GC-------C------------AA--CGACCAUAC-CACG-CUG-AAUACAUCGGUUCUCGUCC-GAUCA-CCGAAAUUAAGCAGCGUCGGGCGC--GGUU--A-GUACUUAG-AUGGGGGACC-----GCUUGGGA----ACACC-GCGU-GUU-GUU-G---GCCU--
>Euglena   
-GA-------G------------UA--CGGCCAUAC-UACC-GGG-AAUACACCUGAACCCGUUC-GAUUU-CAGAAGUUAAGCCGGGUUAGGCCC--AGUU--A-GUACUGAG--UGGGCGACC-----ACUUGGGA----ACACU-GGGU-GCU-GUA-C---GCUU--
>Homo   
-GU-------C------------UA--CGGCCAUAC-CACC-CUG-AACGCGCCCGAUCUCGUCU-GAUCU-CGGAAGCUAAGCAGGGUCGGGCCU--GGUU--A-GUACUUGG-AUGGGAGACC-----GCCUGGGA----AUACC-GGGU-GCU-GUA-G---GCUUU-
>Caenorhabditis   elegans 1
-GC-------U------------UA--CGACCAUAU-CACG-UUG-AAUGCACGCCAUCCCGUCC-GAUCU-GGCAAGUUAAGCAACGUUGAGUCC--AGUU--A-GUACUUGG-AUCGGAGACG-----GCCUGGGA----AUCCU-GGAU-GUU-GUA-A---GC-U--
>Dictyostelium   discoideum 1
-GU-------A------------UA--CGGCCAUAC-UAGG-UUG-GAAACACAUCAUCCCGUUC-GAUCU-GAUAAGUAAAUCGACCUCAGGCCU--UCCA--A-GUACUCUG-GUUGGAGACA-----ACAGGGGA----ACAUA-GGGU-GCU-GUA-U---AC-U--
>Cryptosporidium   parvum 1
-GC-------A------------AU--CGGCCAUAC-UACA-UCG-AAUAUACCGGAUCCCAUCA-GAACU-CCGAAGUCAAGCGGUGUAAGGUUC--GGUU--A-GUACUAGG-GUGGGGGACC-----ACCUGGGA----AGACCAGAAU-GUC-GAU-C---GCCU-C
>Nosema   bombycis 1
-GA--------------------UA--CGGUUAUAU-UUAC-UGA-AAACCACCGGAACCCAUCA-GAACU-CCGAAGUUAAACCAGUAUGAGCUU--AAUU--A-GUACUAAG-AAGGGAGACC-----ACUUGGGA----ACGUU-GGGU-GGUA--------------
>Zea   mays 1
-GG-------A------------UG--CGAUCAUAC-CAGC-ACU-AAAGCACCGGAUCCCAUCA-GAACU-CCGAAGUUAAGCGUGCUUGGGCGA--GAGU--A-GUACUAGG-AUGGGUGACC-----UCCUGGGA----AGUCC-UCGU-GUU-GCA-U---UCC---

