>Campylobacter
augu--------------CCGugauuauACAGau---GUGGAAACGCCUU
GCUCCAU-CCCGAAC-CAAGAAGCUAAGCACAUCGu--------------
----------------------------GGGUGAu------------GAU
ACua-------------CGCCUUACuG---GCAGGG---GGaaaguagcu
cauugcggacuu
 
>Methanothermobacter
guu-------------G-GCGGUC----AUGGC-GUGGGGuuuAUACCUG
AUCUCGU-UUCGAUC-UCAGUAGUUAAGUCCUGCU--------GCG-UUG
----UGG--Gugu------------GUACUGCGGuuuuuuGCuGUGGGAA
GCCCA-CUUCAC-----UGCCAGACAA-----------------------
------------
 
>Candida
--------G-GU----U-GCGGCC----AUAUC-UAGCAGAAAGCACCGu
u-CCCCG-UUCGAUCaACCGUAGUUAAGCUGCUAA--------GAG-CAA
u----------AC--CGAGUAGUGUAGUGGGAGACC----AU-ACGCGAA
ACUAU-UG-UGC-----UGCAAUCu-------------------------
------------
 
>Sulfolobus
-----GCC--CA----C-CCGGUC----ACAGU-GAGCGGGCAACACCCG
GACUCAU-UUCGAAC-CCGGAAGUUAAGCCGCUCAcguuagugGGG-CCG
u----------------------------GGAUACC----GU-GAGGAUC
CGCAG-CC---------------CCACuaaGCUGGGaugGGuuuu-----
------------
 
>Dictyostelium
guau--------------ACGGCC----AUACU--AGGUUGGAAACACAU
CAUCCCG-UUCGAUC-UGAUAAGUAAAUCGACCUC--------AGG-CCu
u-----------C--CAAGUACUCUGGUUGGAGACA----AC-AGGGGAA
CAUAG-GG-UGC-----UGUAUACu-------------------------
------------
 
>Nosema
----------GA----U-ACGGuuauauuua------CUGAAAACCACCG
GAACCCA-UCAGAAC-UCCGAAGUUAAACCAGUAU--------GAG-CUU
----A-A--U------UAGUACUAAGAAGGGAGACC----AC-UUGGGAA
CGUUG-GG-UGGua------------------------------------
------------
 
>Zea
--------G-GA----U-GCGAUC----AUACC--AGCACUAAAGCACCG
GAUCCCA-UCAGAAC-UCCGAAGUUAAGCGUGCUU--------GGG-CGA
----G-A--G------UAGUACUAGGAUGGGUGACC----UC-CUGGGAA
GUCCU-CG-UGU-----UGCAuuCC-------------------------
------------
 
>Cryptosporidium
--------G-CA----A-UCGGCC----AUACU--ACAUCGAAUAUACCG
GAUCCCA-UCAGAAC-UCCGAAGUCAAGCGGUGUA--------AGG-UUC
----G-G--U------UAGUACUAGGGUGGGGGACC----AC-CUGGGAA
GACCA-GA-AugucgauCGCCuc---------------------------
------------
 
>Euglena
----------GA----GuACGGCC----AUACU--ACCGGGAAUACACCU
GAACCCG-UUCGAUU-UCAGAAGUUAAGCCGGGUU--------AGG-CCC
----A-G--U------UAGUACu-GAGUGGGCGACC----AC-UUGGGAA
CACUG-GG-UGC-----UGUACGCuu------------------------
------------
 
>Caenorhabditis
--------G-CU----U-ACGACC----AUAUC--ACGUUGAAUGCACGC
CAUCCCG-UCCGAUC-UGGCAAGUUAAGCAACGUU--------GAG-UCC
----A-G--U------UAGUACUUGGAUCGGAGACG----GC-CUGGGAA
UCCUG-GA-UGU-----UGUAAGCu-------------------------
------------
 
>Drosophila
--------G-CC----A-ACGACC----AUACC--ACGCUGAAUACAUCG
GUUCUCG-UCCGAUC-ACCGAAAUUAAGCAGCGUC--------GGG-CGC
----G-G--U------UAGUACUUAGAUGGGGGACC----GC-UUGGGAA
CACCG-CG-UGU-----UGUUGGCCu------------------------
------------
 
>Homo
--------G-UC----U-ACGGCC----AUACC--ACCCUGAACGCGCCC
GAUCUCG-UCUGAUC-UCGGAAGCUAAGCAGGGUC--------GGG-CCU
----G-G--U------UAGUACUUGGAUGGGAGACC----GC-CUGGGAA
UACCG-GG-UGC-----UGUAGGCuuu-----------------------
------------
 
>Methanospirillum
u------C--AAu---A-GCGGCC----ACAGC--AGGUGUGUCACACCC
GUUCCCAUUCCGAAC-ACGGAAGUUAAGACACCUC--------ACG-UGg
augaC-G--GU---------ACUGAGGUACGCGAGU----CC-UCGGGAA
AUCAU-CCUCGC-----UGCuauuguu-----------------------
------------
 
>Flavobacterium
u---------AA----G-GUGGUU----AUUGC--GGCGGGGCUCGACCU
CUUCCCAUCCCGAAC-AGAGUAGUUAAGCCCGCCU--------GCG-CAG
----AUG--GUACU----------------GCAGUU----AU-GUGGGAG
AGUAU-GU-CGU-----CGCCuuuc-------------------------
------------
 
>Bacillus
uuu-------------G-GUGAUG----AUGGC--AGAGAGGUCACACCC
GUUCCCAUACCGAAC-ACGGAAGUUAAGCUCUCUA--------GCG-CCG
----AUG--G------UAGuu---------GGGACCuuguCC-CUGUGAG
AGUAG-GA-CGU-----CGCCAAGC-------------------------
------------
 
>Thermotoga
au----CC--CC----G-GGUGCC----GAUACuGGGGCGGGAAACACCC
GGUUCCAUUCCGAAC-CCGGCCGUUAAGCCGCCCU--------GGG-CCG
----AUG--G------UAGuau----GGGGGCAGCC----CC-AUGCGAG
AGUAG-GU-AGC-----GCCCGGGGAu-----------------------
------------
 
>Escherichia
ug-----C--CU----G-GCGGCC----GUAGC--GCGGUGGUCCCACCU
GACCCCAUGCCGAAC-UCAGAAGUGAAACGCCGUA--------GCG-CCG
----AUG--G------UAGu-----GUGGGGUCUCC----CC-AUGCGAG
AGUAG-GG-AAC-----UGCCAGGCAu-----------------------
------------
 
>Agrobacterium
----CGAC--CU----G-GUGGUC----AUCGC--GGGGCGGCUGCACCC
GUUCCCuuuCCGAAC-ACGGCCGUGAAACGCCCCA--------GCG-CCA
----AUG--GUACuuCGu-----------CUC-AAG----AC-GCGGGAG
AGUAG-GU-CGC-----UGCCAGGucu-----------------------
------------
 
>Thermus
aau---CC--CC----C-GUGCCC----AUAGC--GGCGUGGAACCACCC
GUUCCCAUUCCGAAC-ACGGAAGUGAAACGCGCCA--------GCG-CCG
----AUG--GUACu----------GGGCGGGCGACC----GC-CUGGGAG
AGUAG-GU-CGG-----UGCGGGGGAu-----------------------
------------
 
>Thermoplasma
--------G-GC----A-ACGGUC----AUAGC--AGCAGGGAAACACCA
GAUCCCAUUCCGAAC-UCGACGGUUAAGCCUGCu---------GCGuauu
g---C-GuuGU---------ACUGUAUGCCGCGAGG----GU-ACGGGAA
GCGCAAUA-UGC-----UGuu-ACCACu----------------------
------------
 
>Halorubrum
--------G-UA----G-GCGGCC----AAAGC--GGCAGGGAAAGACCC
GUACCCAUUCCGAAC-ACGGAAGUGAAGCCUGCCA--------GCGUACC
----A-G--C------UAGUACUGGAGUGGGAGACC----CU-CUGGGAG
CGCUG-GuuCGC-----CGCCUACuc------------------------
------------
 
>Pyrobaculum
-----GCC--CCuaacC-CGGCCA----UAGGC--GCCGGUGAUACGCCC
GGUCUCAUC-AGAAC-CCGGAAGCUAAGGCCGGCG--------CCGCGCU
----C-G--G------GAGUACUGGGCUCCGCGAGG----GC-CCGGGAA
ACCGG-CG-UGC-----UGGGAGGG-G---GCuu----------------
------------
 
>Methanococcus
u----GAC--AU----A-ACGGUC----AAAGC--GGAGGUGUAACAUCC
GAUCCCAUCCCGAUC-UCGGAAAUUAAGCCCUCCA--------GCGAuuc
uuua--A--GUACU----------------GCUAUC----UA-GUGGGAA
CAAAGUGA-CGC-----CGUUAGUCAC-----------------------
------------
 
>Nanoarchaeum
guuuCGuGG-GA----G--GGCCA----UAGCG--GCCCGGGAACCACCC
GUACCCAUCUCGAAC-ACGGAAGUUAAGCCGGGCC--------GCGUCCC
----G-A--G------UGGUACu--GCCCCGCGAAG----GG-GUGGGAA
GCUCGGGA-UGC-----CC-------------------------------
------------
 
>Thermococcus
-------GGuAC----G-GCGGUC----AUAGC--GGCGGGGUCACACCC
GGUCUCGuuuCGACC-CCGGAAGUUAAGCCCGCCA--------GCGAUCC
----C-G--G------UUGUACUGCCCUCCGGGAGG----GG-GCGGGAA
CCGGG-GA-CGC-----CGCCGGCCAC-----------------------
------------
 