>Bacillus   anthracis 1
-UU?--????---U-----?G------?G?-UGAUGAUGG?CAGA?GAG?GUCACACCCGUUCCCAUACCGAACA?CGGAAGUUAAGCUCUCUAG?CGC----CGAUG-GUAG--????????UUGGG??????????A??????CCUUG??--?UC?CCUGUGAGAGUAG------GACGUCGCCAA---GC-???--?--
>Flavobacterium   hydatis 1
-UA?--????---A-----?G------?G?-UGGUUAUUG?CGGC?GGG?GCUCGACCUCUUCCCAUCCCGAACA?GAGUAGUUAAGCCCGCCUG?CGC----AGAUG-GUAC--????????UGCAG????----??UU?--??-----------A?UGUGGGAGAGUAU------GUCGUCGCCUU---UC-???--?--
>Campylobacter   jejuni 3
-AUGUCC??????---------------G--UGAUUAUAC?AGAU?GUG?GAAACGCCUUGCUCCAUCCCGAACC?AAGAAGCUAAGCACAUCGU?GGG----UGAUG-AUAC--????????UACGCCUUACUGGCA??????????????---????GGGGGAAAGUAG------CUCAUUGCG?G---ACU????-?U-
>Agrobacterium   tumefaciens 6
-CG???????ACCU-----?G------?G?-UGGUCAUCG?CGGG?GCG?GCUGCACCCGUUCCCUUUCCGAACA?CGGCCGUGAAACGCCCCAG?CGC----CAAUG-GUAC--????????UUCGU???????????????C??UCAA??---GA?CGCGGGAGAGUAG------GUCGCUGCCAG---GUC????-?U-
>Escherichia   
-UG????????CCU-----?G-------G?-CGGCCGUAG?CGCG?GUG?GUCCCACCUGACCCCAUGCCGAACU?CAGAAGUGAAACGCCGUAG?CGC----CGAUG-GUAG--????????UGUGG??????????G??????GUCUC-?---CC?CAUGCGAGAGUAG------GGAACUGCCAG---GCA????-?U-
>Thermotoga   maritima 1
-AUCC??????CCG-----?G------?G?-UGCCGAUAC?UGGG?GCGGGAAACACCCGGUUCCAUUCCGAACC?CGGCCGUUAAGCCGCCCUG?GGC----CGAUG-GUAG--????????UAUGG??????????G?GGC????AGC-?---CC?CAUGCGAGAGUAG------GUAGCGCCCGG---GGA????-?U-
>Thermus   
-AAUC??????CCC-----?C------?G?-UGCCCAUAG?CGGC?GUG?GAACCACCCGUUCCCAUUCCGAACA?CGGAAGUGAAACGCGCCAG?CGC----CGAUG-GUAC--????????UGGGC??????????G?GGC????GAC-?---CG?CCUGGGAGAGUAG------GUCGGUGCGGG---GGA????-?U-
>Methanothermobacter   
-GU?--?????--U-----?G-------G?-CGGUCAUGG?CGUG?GGG?UUUAUACCUGAUCUCGUUUCGAUCU?CAGUAGUUAAGUCCUGCUG?CGUUGU?GGGUGUGUAC??????????UGCGG??????????U??????UUUUU??--?GC?UGUGGGA----AGCCC?ACUUCACUGCCAG---ACA????-?A-
>Methanospirillum   hungatei 1
-UC?--??AA?--U----??A------?G?-CGGCCACAG?CAGG?UGU?GUCACACCCGUUCCCAUUCCGAACA?CGGAAGUUAAGACACCUCA?CGUGGA?UGACG-GUAC??????????UGAGG??????????U??????AC???GCGAGUC?CUCGGGA----AAUCA?UCCUCGCUGCUAU---UGU????-?U-
>Nanoarchaeum   equitans 1
-GU?--?????--U?---???UCGUGGGA?-GGGCCAUAG?CGGCCCGG?GAACCACCCGUACCCAUCUCGAACA?CGGAAGUUAAGCCGGGCCG?CGUCCC?GAGUG-GUAC??????????UGC---?????????-?-???CCC???GCGAAGG?GGUGGGA----AGCUC?GGGAUGC-----------------CC-
>Thermoplasma   
-GG?---????--C----??A-------A--CGGUCAUAG?CAGC?AGG?GAAACACCAGAUCCCAUUCCGAACU?CGACGGUUAAGCCU?GCUG?CGUAUU?GCGUU-GUAC??????????UGUAU??????????G??????CC???GCGAGGG?UACGGGA----AGCGC?AAUAUGCUGUUAC---CAC????-?U-
>Methanococcus   
UGA?--?????--C?---AUA?-----?A?-CGGUCAAAG?CGGA?GGU?GUAACAUCCGAUCCCAUCCCGAUCU?CGGAAAUUAAGCCCUCCAG?CGAUUC?UUUAA-GUAC??????????UGCUA???------?U??????C-----------UAGUGGGA----ACAAA?GUGACGCCGUUAG---UCA????-?C-
>Thermococcus   
-GG?--?????--U?---ACG?-----?G?-CGGUCAUAG?CGGC?GGG?GUCACACCCGGUCUCGUUUCGACCC?CGGAAGUUAAGCCCGCCAG?CGAUCC?CGGUU-GUAC??????????UGCCC??????????U??????CC???GGGAGGG?GGCGGGA----AC?CG?GGGACGCCGCCGG---CCA????-?C-
>Pyrobaculum   aerophilum 1
-GC?--?????--?CCCU??A------?ACCCGGCCAUAGGCGCC?GGU?GAUACGCCCGGUCUCAUCA-GAACC?CGGAAGCUAAGGCCGGCGC?CGCGCU?CGGGA-GUAC??????????UGGGC??????????U??????CC???GCGAGGG?CCCGGGA----AACCG??GCGUGCUGGGAGGGGGCU????-?U-
>Sulfolobus   
-GC?--?????--C?--???C------?ACCCGGUCACAG?UGAG?CGG?GCAACACCCGGACUCAUUUCGAACC?CGGAAGUUAAGCCGCUC??ACGUU????????-?---AGUGGGGCCGUGGAU??????????A??????CC???GUGAGGA?UCCGC-A----GCCCC?ACUAAGCUGGGAUGGGUUU????-?U-
>Halorubrum   distributum 1
-GU?--?????--A-----?G-------G--CGGCCAAAG?CGGC?AGG?GAAAGACCCGUACCCAUUCCGAACA?CGGAAGUGAAGCCUGCCAG?CGUACC?AGCUA-GUAC??????????UGGAG??????????U??????GG???GAGACCC?UCUGGGA----GCGCU?GGUUCGCCGCC-U---ACU????-?C-
>Candida   albicans 1
-GG?--?????--U-----?U-------G--CGGCCAUAU?CUAG?CAG?AAAGCACCGUUCCCCGUUC-GAUCAACCGUAGUUAAGCUGCUAAG?AGCA?AUACCGA-GUAG??????????UGUAG??????????U??????GG???GAGACCA?UACGCGA----AACUA?UUGU-GCUGCA-A---UC????--?U-
>Drosophila   melanogaster 1
-GC?--?????--C-----?A-------A--CGACCAUAC?CACG?CUG?AAUACAUCGGUUCUCGUCC-GAUCA?CCGAAAUUAAGCAGCGUCG?GGCG?C?GGUUA-GUAC??????????UUAGA??????????U??????GG???GGGACCG?CUUGGGA----ACACC?GCGU-GUUGUU-G---GCC????-?U-
>Euglena   
-GA?--?????--G-----?U-------A--CGGCCAUAC?UACC?GGG?AAUACACCUGAACCCGUUC-GAUUU?CAGAAGUUAAGCCGGGUUA?GGCC?C?AGUUA-GUAC??????????UG?AG??????????U??????GG???GCGACCA?CUUGGGA----ACACU?GGGU-GCUGUA-C---GCU????-?U-
>Homo   
-GU?--?????--C-----?U-------A--CGGCCAUAC?CACC?CUG?AACGCGCCCGAUCUCGUCU-GAUCU?CGGAAGCUAAGCAGGGUCG?GGCC?U?GGUUA-GUAC??????????UUGGA??????????U??????GG???GAGACCG?CCUGGGA----AUACC?GGGU-GCUGUA-G---GCU???UU??-
>Caenorhabditis   elegans 1
-GC?--?????--U-----?U-------A--CGACCAUAU?CACG?UUG?AAUGCACGCCAUCCCGUCC-GAUCU?GGCAAGUUAAGCAACGUUG?AGUC?C?AGUUA-GUAC??????????UUGGA??????????U??????CG???GAGACGG?CCUGGGA----AUCCU?GGAU-GUUGUA-A---GC-???--?U-
>Dictyostelium   discoideum 1
-GU?--?????--A-----?U-------A--CGGCCAUAC?UAGG?UUG?GAAACACAUCAUCCCGUUC-GAUCU?GAUAAGUAAAUCGACCUCA?GGCC?U?UCCAA-GUAC??????????UCUGG??????????U??????UG???GAGACAA?CAGGGGA----ACAUA?GGGU-GCUGUA-U---AC-???--?U-
>Cryptosporidium   parvum 1
-GC?--?????--A-----?A-------U--CGGCCAUAC?UACA?UCG?AAUAUACCGGAUCCCAUCA-GAACU?CCGAAGUCAAGCGGUGUAA?GGUU?C?GGUUA-GUAC??????????UAGGG??????????U??????GG???GGGACCA?CCUGGGA----AGACCAGAAU-GUCGAU-C---GCC????-?UC
>Nosema   bombycis 1
-G-----A------------U-------A--CGGUUAUAU?UUAC?UGA?AAACCACCGGAACCCAUCA-GAACU?CCGAAGUUAAACCAGUAUG?AGCU?U?AAUUA-GUAC??????????UAAGA??????????A??????GG???GAGACCA?CUUGGGA----ACGUU?GGGU-G-------------GUA-----
>Zea   mays 1
-GG?--?????--A-----?U-------G--CGAUCAUAC?CAGC?ACU?AAAGCACCGGAUCCCAUCA-GAACU?CCGAAGUUAAGCGUGCUUG?GGCG?A?GAGUA-GUAC??????????UAGGA??????????U??????GG???GUGACCU?CCUGGGA----AGUCC?UCGU-GUUGCA-U---UCC???--?--

