>Agrobacterium
-CGACC---UGG-UGGUC-AUCG-CGGGG-CGGCU-GCACCCGUUCCCUUUCCGAACA-C
GGCCGUGAAACGC-----CCCAGCG---CCA-AUGGUA---CUUCG-----UCUCAAGAC
-----GCGGGAG-AGUAGG-UCGCUGCCAG--GUC--U
>Cryptobranchus
--GC-----CUA-CGGCC-AUAC-CACCCU-GAAU-GCGCCCGAUCUCGU-CUGAACU-C
AGAAGCUAAGCAGG-----CUUGGG---CCU-G-GUUAGUACUUG-----GAUGGGAGAC
UG--CCUGGGAAUACCA-G-GUGCUGUAG-GC---UUU
>Homo
--GU-----CUA-CGGCC-AUAC-CACCCU-GAAC-GCGCCCGAUCUCGU-CUGAUCU-C
GGAAGCUAAGCAGG-----GUCGGG---CCU-G-GUUAGUACUUG-----GAUGGGAGAC
CG--CCUGGGAAUACCG-G-GUGCUGUAG-GC---UUU
>Xenopus
--GC-----CUA-CGGCC-AUAC-CACCCU-GAAA-GUGCCCGAUAUCGU-CUGAUCU-C
GGAAGCCAAGCAGG-----GUCGGG---CCU-G-GUUAGUACUUG-----GAUGGGAGAC
CG--CCUGGGAAUACCA-G-GUGUCGUAG-GC---U-U
>Amoebidium
--GG-----UUA-CGGCC-AUAC-CUAGCA-GAAA-GCACCCCAUCUCGU-CCGAUCU-G
GGAAGUUAAACUGC-----UAUGGG---CGU-G-GUUAGUACUGC-----GGUGGGGGAC
CA--CGCGGGAAUACCA-C-GUGCUGUAA-UC-----U
>Physarum
--GG-----AUG-CGGCC-AUAC-UAAGGA-GAAA-GCACCUCAUCCCGU-CCGAUCU-G
AGAAGUUAAGCUCC-----UUCAGG---CGU-G-GUUAGUACUGG-----GGUGGGGGAC
CA--CCUGGGAAUCCCA-C-GUGCUGCAU-UC----UU
>Aquifex
-----CCCCUGG-UGGCC-AUAG-CGGGG-GGGAA-ACACCCGGUCCCAUUCCGAACC-C
GGCAGUUAAGCCC-----CCCAGCG---CCG-AUGAU---ACUGUG-------CCGGCAG
CG-GCACGGGAA-AGUAGG-UCGCUGCCAGGGG-----
>Chlamydia
----CU---UGG-UGAUA-AUAG-AGAGA-GGGAA-ACACCUGACACCAUUCCGAACU-C
AGAAGUUAAGCCU-----CUGAUCG---CUG-AUGGUA---CUAUA--------CACAAG
AG--UAUGGGAG-AGUAGG-UCGUCGCCAA---GCA-U
>Cryptosporidium
--G---C--AAU-CGGCC-AUAC-UACAUC-GAAU-AUACCGGAUCCCAU-CAGAACU-C
CGAAGUCAAGCGGU-----GUAAGG--UUCG---GUUAGUACUAG-----GGUGGGGGAC
CA--CCUGGGAAGACCAGA-AUGUCGAUC---GCCU-C
>Desulfurococcus
-UGC--CCGAC-CCGGCC-AUAG-UGGCC-GGGCA-ACACCCGGUCUCGUUUCGAACC-C
GGAAGUUAAGCCG-----GCCA-----------CGUCAGAACGGCCGUGAGGUCCGAGAG
GC--CUC-GCAGCCGUUCU-GAGCUGGGAUCGGGCACC
>Euglena
--G-----AGU-ACGGCC-AUAC-UACCG-GGAAU-ACACCUGAACCCGU-UCGAUUU-C
AGAAGUUAAGCCGG-----GUUAGG---CCC-A-GUUAGUACUGA-----G-UGGGCGAC
CA--CUUGGGAACACUG-G-GUGCUGUAC-GC----UU
>Flavobacterium
--U-----AAGG-UGGUU-AUUG-CGGCG-GGGCU-CGACCUCUUCCCAUCCCGAACA-G
AGUAGUUAAGCCC-----GCCUGCG---CAG-AUG---GUACUGC-----A----GUUAU
-----GUGGGAG-AGUAUG-UCGUCGCCUU---UC---
>Gelidium
-----AC--AUU-CGGCC-AUAC-UAAGUC-GACAUGUACCCGAUCCCAUCCCGAACU-C
GGAAGUCAAGUCGC----UUCAG----GCCG-G-GUUAGUACUGA-----GGUGAGGGAU
CA--CUCGGGAAUCCCCGG--UGCCGAAUG-------U
>Haloarcula
--U-----UAGG-CGGCC-ACAG-CGGUG-GGGUUGCCUCCCGUACCCAUCCCGAACA-C
GGAAGAUAAGCCC-----ACCAGCGU-UCCG-G--GGAGUACUGG-----AGUGCGCGAG
CC--UCUGGGAAACGCGGU-UCGCCGCCACC-------
>Haloferax
-UU-----AAGG-CGGCC-AGAG-CGGUG-AGGUU-CCACCCGUACCCAUCCCGAACA-C
GGAAGUUAAGCUC-----ACCUGCGU-UCUG-G--UCAGUACUGG-----AGUGAGCGAU
CC--UCUGGGAAAUCCAGU-UCGCCGCCCCU-------
>Natrinema
-UU-----ACGG-CGGCC-ACAG-CGGCG-AGGUA-CCUCCCGUACCCAUCCCGAACA-C
GGAAGAUAAGCUC-----GCCUGCGU-UUCG-G--UCAGUACUGG-----AGUGGGCGAC
CC--UCUGGGAACCCCGAU-UCGCCGCCACC--ACU-C
>Halobacterium
-UU-----AAGG-CGGCC-AUAG-CGGUG-GGGUU-ACUCCCGUACCCAUCCCGAACA-C
GGAAGAUAAGCCC-----GCCUGCGU-UCCG-G--UCAGUACUGG-----AGUG--CGAG
CC--UCUGGGAAAUCCGGU-UCGCCGCCU----AC--U
>Halorubrum
--G-----UAGG-CGGCC-AAAG-CGGCA-GGGAA-AGACCCGUACCCAUUCCGAACA-C
GGAAGUGAAGCCU-----GCCAGCGU-ACCA-G--CUAGUACUGG-----AGUGGGAGAC
CC--UCUGGGAGCGCUGGU-UCGCCGCCU----ACU-C
>Methanolobus
--G-----GUGG-CGGCC-AUAG-CGGCG-GGGCA-AUUCCUGUACCCAUCCCGAACA-C
AGAAGAUAAGCCC-----GCCUGCGU-UCUA-U--ACUGUACUAA-----AGUAUGAGAG
UC--UUUGGGAAAUAUGGA-ACGCUGCCACC-AAC---
>Nanoarchaeum
--GUUUCGUGGGAGGGCC-AUAG-CGGCCCGGGAA-CCACCCGUACCCAUCUCGAACA-C
GGAAGUUAAGCCG-----GGCCGCGU-CCCG-A--GUGGUACUGC-----C--CCGCGAA
GG--GGUGGGAAGCUCGGG-AUGC----------C--C
>Nosema
--G------AUA-CGGUU-AUAU-UUACU-GAAAA-CCACCGGAACCCAU-CAGAACU-C
CGAAGUUAAACCA-----GUAUGAG---CUU-A-AUUAGUACUAA-----GAAGGGAGAC
CA--CUUGGGAACGUUGGG-U-----------GGUA--
>Pyrococcus
--GGUA---CGG-CGGUC-AUAG-CGGGG-GGGCC-ACACCCGGUCUCAUUUCGAACC-C
GGAAGUUAAGCCC-----CCCAGCGA-UCC---CGGCUGUACUGC-----CCUCCGAGAG
GG--GGCGGGAACCG-GGG-ACGCCGCCGG---CCA--
>Thermococcus
--GGUA---CGG-CGGUC-AUAG-CGGCG-GGGUC-ACACCCGGUCUCGUUUCGACCC-C
GGAAGUUAAGCCC-----GCCAGCGA-UCC---CGGUUGUACUGC-----CCUCCGGGAG
GG--GGCGGGAACCG-GGG-ACGCCGCCGG---CCA-C
>Thermoplasma
--GG--CAA----CGGUC-AUAG-CAGCA-GGGAA-ACACCAGAUCCCAUUCCGAACU-C
GACGGUUAAGCCU------GCUGCGU-AUUG---CGUUGUACUGU-----AUGCCGCGAG
GG--UACGGGAAGCGCAAU-AUGCUGUUA----CCACU
>Zea
--GG-----AUG-CGAUC-AUAC-CAGCAC-UAAA-GCACCGGAUCCCA-UCAGAACU-C
CGAAGUUAAGCGU-----GCUUGGG----CG-AGAGUAGUACUAG-----GAUGGGUGAC
CU--CCUGGGAAGUCCU-C-GUGUUGCAU-UC-----C
>Candida
--GG-----UUG-CGGCC-AUAU-CUAGCA-GAAA-GCACC-GUUCCCCGUUCGAUCAAC
CGUAGUUAAGCUG-----CUAAGAG---CAA-UACCGAGUAGUGU-----AGUGGGAGAC
CA--UACGCGAAACU-AUU-GUGCUGCAA-UC-----U
>Saccharomyces
--GG-----UUG-CGGCC-AUAU-CUACCA-GAAA-GCACC-GUUCUCCGUCCGAUCAAC
UGUAGUUAAGCUG-----GUAAGAG---CCU-GACCGAGUAGUGU-----AGUGGGUGAC
CA--UACGCGAAACU-CAG-GUGCUGCAA-UC-----U
>Methanospirillum
-U----CAAUAG-CGGCC-ACAG-CAGGU-GUGUC-ACACCCGUUCCCAUUCCGAACA-C
GGAAGUUAAGACA-----CCUCACGU-G--G-AUGACGGUACUGA-----GGUACGCGAG
UC--CUCGGGAAAUCAUCC-UCGCUGCUAUUG----UU
>Pyrobaculum
--GCCCCUAACC-CGGCC-AUAGGCGCCG-GUGAU-ACGCCCGGUCUCAU-CAGAACC-C
GGAAGCUAAGGCC-----GGCGCCGC-GCU---CGGGAGUACUGG-----GCUCCGCGAG
GG--CCCGGGAAA-CCGGC-GUGCUGGGAGGGGGCU-U
>Caenorhabditis
--G--C---UUA-CGACC-AUAU-CACGUU-GAAU-GCACGCCAUCCCGU-CCGAUCU-G
GCAAGUUAAGCAA-----CGUUGAGU-CCA----GUUAGUACUUG-----GAUCGGAGAC
GG--CCUGGGAAUCCU-GG-AUGUUGUAA-GC-----U
>Dictyostelium
--G--U---AUA-CGGCC-AUAC-UAGGUU-GGAA-ACACAUCAUCCCGU-UCGAUCU-G
AUAAGUAAAUCGA------CCUCAGG--CCU-U-CCAAGUACUCU-----GGUUGGAGAC
AA--CAGGGGAACAUA-GG-GUGCUGU-AUAC-----U
>Bacillus
----UU---UGG-UGAUG-AUGG-CAGAG-AGGUC-ACACCCGUUCCCAUACCGAACA-C
GGAAGUUAAGCUC-----UCUAGCG---CCG-AUGGUAGUUGGG-------ACC-UUGUC
C----CUGUGAG-AGUAGG-ACGUCGCCAA---GC---
>Geobacillus
----CC---UAG-UGGUG-AUAG-CGGAG-GGGAA-ACACCCGUUCCCAUCCCGAACA-C
GGAAGUUAAGCCC-----UCCAGCG---CCG-AUGGUAGUUGGG-------GCCAGCGCC
C----CUGCAAG-AGUAGG-UCGCUGCUAG---GC---
>Spirochaeta
----CC---UGG-UGAUC-AUAG-CGAAG-AGGUC-CCACCCGUUCCCAUCCCGAACA-C
GGAAGUUAAGCUC-----UUCAGCG---CCG-AUGGUAC---------------UGCUAU
U----GCGGGAG-AGUAGG-UCGUCGCCAG---GC--U
>Thermus
AAUCCC---CCG-UGCCC-AUAG-CGGCG-UGGAA-CCACCCGUUCCCAUUCCGAACA-C
GGAAGUGAAACGC-----GCCAGCG---CCG-AUGGUACUGG---------GCGGGCGAC
CG--CCUGGGAG-AGUAGG-UCGGUGCGGG---GGA-U
>Methanothermus
--GGUA---CGG-CGACC-AUAG-CGGGG-GGGCC-ACACCUGAACCCGUUCCGAUCU-C
AGAAGUUAAGCCC-----CCCUGCGU-UG---GAGGUGGUACUGC-----AA--CGUUAG
UU---GCGGGAAGCCUCCA-ACGUCGCCGG-C-CCA--
>Methanosarcina
-GGAGU---UUG-GCGCC-AUAG-CGGCA-GUGUA-ACUCCUGUACCCAUCCCGAACA-C
AGUAGAUAAGCCU-----GCCCGCGU-UCCU-U--ACUGUACUGA-----AGUGUGCGAG
CC--UUCGGGAACUCUGGA-UCGCUGCCAUAC-UCACC
>Methanosarcina.v
--GAUC---UGG-CAGCC-AUAG-CGGCA-GGUGU-AAUCCUGUACCCAUCCCGAACA-C
AGUAGAUAAGCCU-----GCCCGCGU-UCCU-U-GCCUGUACUGA-----AGUGUGCGAG
CU--U-CGGGAACUCUGGA-UCGU-GCCAUA--UCAGU
>Archeoglobus
-AUG-C---CGA-CGGUC-AUAG-GACGG-GGGAA-ACACCCGGACUCAUUCCGAACC-C
GGAAGUUAAGCCC-----CGUUCCGU-CCCG-C--ACAGUACUGU-----GUUCCGAGAG
GG--CACGGGAACUGCGGG-AACCGU-CGG---C-U-U
>Thermotoga
-AUCCC---CGG-GUGCCGAUAC-UGGGGCGGGAA-ACACCCGGUUCCAUUCCGAACC-C
GGCCGUUAAGCC-------GCCCUGG-GCCG-AUGGUAGUAUGGG-----GGC-----AG
CC-CCAUGCGAG-AGUAGG-UAGCGCCCGG---GGA-U
>Methanococcus
-UGACA---UAA-CGGUC-AAAG-CGGAG-GUGUA-ACAUCCGAUCCCAUCCCGAUCU-C
GGAAAUUAAGCCC-----UCCAGCGA-UUCU---UUAAGUACUG------------CUAU
C--UAGUGGGAACAAAGUG-ACGCCGUUAG---UCA-C
>Methanothermococcus
-UGAUA---UAA-CGGUC-AUAG-CGGAG-GAGCC-ACAUCCGAUCCCGUCCCGAUCU-C
GGAAAUUAAGCCC-----UCCAGCGA-UACC---CUAAGUACUG------------CCAU
U--UGGUGGGAACAGGGUG-ACGCUGUUGA---UCA-C
>Campylobacter
AUGUC-----CG-UGAUU-AUAC-AGAUGU-GGAA-ACGCCUUGCUCCAUCCCGAACC-A
AGAAGCUAAGCAC--------AUCGUGGGUG-AUGAUA---CUAC--------GCCUUAC
UGGCAGGGGGAA-AGUAGC-UCAUUGCG---GAC--UU
>Drosophila
--GCCA-----A-CGACC-AUAC-CACGCU-GAAU-ACAUCGGUUCUCG-UCCGAUCA-C
CGAAAUUAAGCAGCGU--CGG-GC---GCGG-UUAGUA---CUUA---GAU--GGGGGAC
CGC--UUGGGAA-CACCGC-GUGUUGUU---GGCC--U
>Escherichia
-UGCCU----GG-CGGCC-GUAG-CGCGGU-GGUC-CCACCUGACCCCAUGCCGAACU-C
AGAAGUGAAAC---GC--CGUAGC---GCCG-AUGGUA---GU-----GUG--GGGUCUC
CCC--AUGCGAG-AGUAGG-GAACUGCCA--GGCA--U
>Streptomyces
--GUUU---CGG-UGGUC-AUAG-CGUUAG-GGAA-ACGCCCGGUUACAUUCCGAACC-C
GGAAGCUAAGCCUU-----ACAGC---GCCG-AUGGUA---CUGC----AG--GGGGGAC
CCU--GUGGGAG-AGUAGG-ACGCCGCC---GAAC--A
>Sulfolobus
--GCCC---ACC-CGGUC-ACAG-UGAGCG-GGCA-ACACCCGGACUCAUUUCGAACC-C
GGAAGUUAAGCCGCUCACGUUAGUGGGGCCG-UGGAUA---CCGU---GAG--G---AUC
CGC-------AG-CCCCACUAAGCUGGGAUGGGUU-UU
>Methanothermobacter
--GU-----UGG-CGGUC-AUGG-CGUGGG-GUUU-AUACCUGAUCUCGUUUCGAUCU-C
AGUAGUUAAGUCCU-----GCUGCGUUGUGGGUGUGUA---CUGC---G-----GUUUUU
UG-CUGUGGGAA-GCCCACUUCACUGCCA--GACA--A
