>Campylobacter   jejuni 3
AUG-U---CC------GUGAUUAUAC-AGAUG-UGGAAACGCCUUGCUCCAUCCCGAACC
-AAGAAGCUAAGCACAUCGUGGG---U---------GAU-GAUACUACGCCUUACUGGC-
-AGGGGGAAAG-UAG-C-UCAUUGC-GG----ACUU
>Methanothermobacter
GUU------G------GCGGUCAUGG-CGUGG-GGUUUAUACCUGAUCUCGUUUCGAUCU
-CAGUAGUUAAGUCCUGCUGCGUUGUG---------GGUGUGUACUGCGGUUU---UUUG
CUGUGGGAAGCCCAC-U-UCACUGC-CA---GACAA
>Candida   albicans 1
GGU------U------GCGGCCAUAU-CUAGC-AGAAAGCACCGUUCCCCGU-UCGAUCA
ACCGUAGUUAAGCUGCUAAGAGCAAUA---------CCG-AGUAGUGUAGUGGGA-GACC
AUACGCGAAAC-UAU-U-GUGCUGC-A-----AUCU
>Sulfolobus
GCC-C---AC------CCGGUCACAG-UGAGC-GGGCAACACCCGGACUCAUUUCGAACC
-CGGAAGUUAAGCCGCUCA-CGU---UAGUGGGGCCGUG-GAUACCGUGAGG-AUCCGC-
-A--GCCCCAC-UAA-G-CUGGGAUGGG----UUUU
>Dictyostelium   discoideum 1
GUA------U------ACGGCCAUAC-UAGGU-UGGAAACACAUCAUCCCGU-UCGAUCU
-GAUAAGUAAAUCGACCUCAGGCC-UU---------CCA-AGUACUCUGGUUGGA-GACA
ACAGGGGAACA-UAG-G-GUGCUGU-A-----UACU
>Nosema   bombycis 1
GA-------U------ACGGUUAUAU-UUACU-GAAAACCACCGGAACCCAU-CAGAACU
-CCGAAGUUAAACCAGUAUGAGCU-UA---------AUU-AGUACUAAGAAGGGA-GACC
ACUUGGGAACG-UUG-G-GU------------GGUA
>Zea   mays 1
GGA------U------GCGAUCAUAC-CAGCA-CUAAAGCACCGGAUCCCAU-CAGAACU
-CCGAAGUUAAGCGUGCUUGGGCG-AG---------AGU-AGUACUAGGAUGGGU-GACC
UCCUGGGAAGU-CCU-C-GUGUUGC-A-----UUCC
>Cryptosporidium   parvum 1
GCA------A------UCGGCCAUAC-UACAU-CGAAUAUACCGGAUCCCAU-CAGAACU
-CCGAAGUCAAGCGGUGUAAGGU-UCG---------GUU-AGUACUAGGGUGGGG-GACC
ACCUGGGAAGACCAG-A-AUGUCGA-UC---GCCUC
>Euglena
GAG------U------ACGGCCAUAC-UACCG-GGAAUACACCUGAACCCGU-UCGAUUU
-CAGAAGUUAAGCCGGGUUAGGC-CCA---------GUU-AGUACUGAG-UGGGC-GACC
ACUUGGGAACA-CUG-G-GUGCUGU-AC----GCUU
>Caenorhabditis   elegans 1
GCU------U------ACGACCAUAU-CACGU-UGAAUGCACGCCAUCCCGU-CCGAUCU
-GGCAAGUUAAGCAACGUUGAGU-CCA---------GUU-AGUACUUGGAUCGGA-GACG
GCCUGGGAAUC-CUG-G-AUGUUGU-AA-----GCU
>Drosophila   melanogaster 1
GCC------A------ACGACCAUAC-CACGC-UGAAUACAUCGGUUCUCGU-CCGAUCA
-CCGAAAUUAAGCAGCGUCGGGC-GCG---------GUU-AGUACUUAGAUGGGG-GACC
GCUUGGGAACA-CCG-C-GUGUUGU-UG----GCCU
>Homo
GUC------U------ACGGCCAUAC-CACCC-UGAACGCGCCCGAUCUCGU-CUGAUCU
-CGGAAGCUAAGCAGGGUCGGGC-CUG---------GUU-AGUACUUGGAUGGGA-GACC
GCCUGGGAAUA-CCG-G-GUGCUGU-AG---GCUUU
>Methanospirillum   hungatei 1
UCA-A---UA------GCGGCCACAG-CAGGU-GUGUCACACCCGUUCCCAUUCCGAACA
-CGGAAGUUAAGACACCUCACGUGGAU---------GAC-GGUACUGAGGUACGC-GAGU
CCUCGGGAAAU-CAUCC-UCGCUGC-UA---UUGUU
>Flavobacterium   hydatis 1
UAA------G------GUGGUUAUUG-CGGCG-GGGCUCGACCUCUUCCCAUCCCGAACA
-GAGUAGUUAAGCCCGCCUGCGC---A---------GAU-GGUACUGCAGU--------U
AUGUGGGAGAG-UAU-G-UCGUCGC-C-----UUUC
>Bacillus   anthracis 1
UUU------G------GUGAUGAUGG-CAGAG-AGGUCACACCCGUUCCCAUACCGAACA
-CGGAAGUUAAGCUCUCUAGCGC---C---------GAU-GGUAGUUGGGACCUU-GUC-
-CCUGUGAGAG-UAG-G-ACGUCGC-CA-----AGC
>Thermotoga   maritima 1
AUC-CCC-GG------GUGCCGAUAC-UGGGGCGGGAAACACCCGGUUCCAUUCCGAACC
-CGGCCGUUAAGCCGCCCUGGGC---C---------GAU-GGUAGUAUG-GGGGC-AGCC
CCAUGCGAGAG-UAG-G-UAGCGCC-CG---GGGAU
>Escherichia
UGC-C---UG------GCGGCCGUAG-CGCGG-UGGUCCCACCUGACCCCAUGCCGAACU
-CAGAAGUGAAACGCCGUAGCGC---C---------GAU-GGUAGUGUG--GGGU-CUCC
CCAUGCGAGAG-UAG-G-GAACUGC-CA---GGCAU
>Agrobacterium   tumefaciens 6
CGA-CC--UG------GUGGUCAUCG-CGGGG-CGGCUGCACCCGUUCCCUUUCCGAACA
-CGGCCGUGAAACGCCCCAGCGC---C---------AAU-GGUACUUCGUCUCAA-GAC-
--GCGGGAGAG-UAG-G-UCGCUGC-CA---GGUCU
>Thermus
AAU-CCC-CC------GUGCCCAUAG-CGGCG-UGGAACCACCCGUUCCCAUUCCGAACA
-CGGAAGUGAAACGCGCCAGCGC---C---------GAU-GGUACUGGG-CGGGC-GACC
GCCUGGGAGAG-UAG-G-UCGGUGC-GG---GGGAU
>Thermoplasma
GGC------A------ACGGUCAUAG-CAGCA-GGGAAACACCAGAUCCCAUUCCGAACU
-CGACGGUUAAGCCU-GCUGCGUAUUG---------CGU-UGUACUGUAUGCCGC-GAGG
GUACGGGAAGCGCAA-U-AUGCUGU-UA---CCACU
>Halorubrum   distributum 1
GUA------G------GCGGCCAAAG-CGGCA-GGGAAAGACCCGUACCCAUUCCGAACA
-CGGAAGUGAAGCCUGCCAGCGUACCA---------GCU-AGUACUGGAGUGGGA-GACC
CUCUGGGAGCG-CUG-GUUCGCCGC-CU----ACUC
>Pyrobaculum   aerophilum 1
GCC-CCUAAC------CCGGCCAUAGGCGCCG-GUGAUACGCCCGGUCUCAU-CAGAACC
-CGGAAGCUAAGGCCGGCGCCGCGCUC---------GGG-AGUACUGGGCUCCGC-GAGG
GCCCGGGAAAC-CGG-C-GUGCUGG-GAGGGGGCUU
>Methanococcus
UGACA---UA------ACGGUCAAAG-CGGAG-GUGUAACAUCCGAUCCCAUCCCGAUCU
-CGGAAAUUAAGCCCUCCAGCGAUUCU---------UUA-AGUACUGCU--------AUC
UAGUGGGAACA-AAGUG-ACGCCGU-UA---GUCAC
>Nanoarchaeum   equitans 1
GUU------UCGUGGGAGGGCCAUAG-CGGCCCGGGAACCACCCGUACCCAUCUCGAACA
-CGGAAGUUAAGCCGGGCCGCGUCCCG---------AGU-GGUACUGCC--CCGC-GAAG
GGGUGGGAAGCUC----------GG-GA---UGCCC
>Thermococcus
GGU-A---CG------GCGGUCAUAG-CGGCG-GGGUCACACCCGGUCUCGUUUCGACCC
-CGGAAGUUAAGCCCGCCAGCGAUCCC---------GGU-UGUACUGCCCUCCGG-GAGG
GGGCGGGAACC-GGG-G-ACGCCGC-CG---GCCAC
